Phum006111.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:5700-7674[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-12 2.3e-09 36.0 0.0 8 72 21 81 16 83 0.85 2 2 1.1e-15 1.9e-12 45.9 0.3 8 50 312 355 306 357 0.91
Sequence Information
- Coding Sequence
- ATGttggatgaaaataaaaaaaaacaattaaaagatTGTAAATTGGATGATGAATTATTGCTCAAACCTTTTGAATTAGGTTGGACAAGAGAAGTTGTTAAAAGGGTTGTCACTAAAAATAGAAATCTTAATtgtgatatttattattttagtccGAGTGGGAAAAAAATCAGATCGTTAActgaaatcaaattaaatttgaccGATGGACTAACACCagaatgtttttcatttaaacgacAGCCATTaggaataaatgaaaattttgaaacggTAAGAGATGctagaaataaaagaaaaggtcATGGATTATCTAAAGAGAATACCAAGTGTTTGAGAGGTACTACTAAAAAGACTGAAACTGCCATTGCCAAAGCAACCCACAATCAtgtaataagaaaagaattaataaattcaattatgACAAGGAAAAAGTCGTCTCCGATAAAACAAAAGTCAAATTCAAAAGTGAGAAATGATAAAACAAGAACTAATGgtagaggtaaaaaaaaagaaagcataaatgataaaatgataaaagtgagtgatttaaaaaaatctagtGTTAAAagtgagacaaaaaaaattaaaactaatagGGGACAGGTTGGACGAAAagcatgtaaaaataaaaaaatattaaaaaaaataataactaaaagTAAAATGAATCAATCGAAAATAACTTCGAGgcaaaaaattcttaaaaatgttatgaaaaaaaaagaacctaatgataatgatattgataaaaaatcaacATTTAAAGATCTCAGAAGCATTGTTAAAAGAAATATAGGAAAATATAgagaaatgagagaaaaacaaaaaatggccATTAAttctcaatttaaaaaaaatataagtaaaatcgtttttaaacatGTTACAAAACGAagGTCGGAACCGatatcaaaaaacaaacaattgtaCCTGAAACCACTTGAAAAAGGCTGGAGAAGAGAATTGGTATATAGAAGAAATGGTACTAAAACTGGACAACGTGCagatgtttattattttcatccgaatggtaaaaaattaagatCTTGCCGGGAAGTTTCTGAAAATTGTTGTGGAGAACCTTGTGAAATTATAAGAAAAGCAAGATCACACACAAGAATTGCctaa
- Protein Sequence
- MLDENKKKQLKDCKLDDELLLKPFELGWTREVVKRVVTKNRNLNCDIYYFSPSGKKIRSLTEIKLNLTDGLTPECFSFKRQPLGINENFETVRDARNKRKGHGLSKENTKCLRGTTKKTETAIAKATHNHVIRKELINSIMTRKKSSPIKQKSNSKVRNDKTRTNGRGKKKESINDKMIKVSDLKKSSVKSETKKIKTNRGQVGRKACKNKKILKKIITKSKMNQSKITSRQKILKNVMKKKEPNDNDIDKKSTFKDLRSIVKRNIGKYREMREKQKMAINSQFKKNISKIVFKHVTKRRSEPISKNKQLYLKPLEKGWRRELVYRRNGTKTGQRADVYYFHPNGKKLRSCREVSENCCGEPCEIIRKARSHTRIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -