Phum006016.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:69766-72678[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-13 7.9e-10 37.5 1.0 7 70 343 404 337 411 0.89 2 2 1.9e-18 3.5e-15 54.7 0.1 8 71 478 539 472 544 0.95
Sequence Information
- Coding Sequence
- ATGAAATCGTCAGAAAAGGTTAATGAGAAAATTGGTACAACAACACAAATTAGGAGTTCTTTAAGTTCAGCAGTAAACAAAAGCAGCTATTTACTTAATCAAATCAGCAAACTATCCGCTGATCATGATGTGACAGTTTCTGGCACAATGATTAAAGTAACCTACAAGAAAGCATTAAAGCATCATTTTTCCTCACCCAAGTTTTTCGATagatataatttaaatgatgaaataCTTAGTAGAAAAAGTATGAGTACTTTTGTAAACAAGTTAGATTCTCAAAATATTCAAAGTGGAACTAAAGGAACTTTTTTAAGTAGAAATAAAGTGTGTGGTGATAATATAATACTTTCGGAAAATAAACCTGCTTACATTAGGAAGGATATCAAACATTCACTTTTTCATTCCACACCGAAATCAAATTTAGATGGATGTGAAAGAGATAAAAGAGAATTTGTCAATGAATTAAGCTTTATTGTAGAATTAGATaggaaaaatcacaaaaaaaatccacatATAAGTATTTTTCAACCTAAACCTACCTTTGCCATGGATTCAAATCATCCAGCCACAAGTTACTCAGGTTTTAATTCCAAACCACcccaattaaaaatgaattcagATGAAATATCTTCAAGGAATAGTATTAAAATTCCAAAAGGTATTACTATAATCAGGTTAAAAGGTAATACTAGTACAAAAAATGGTGATAGTAGTAATATTGAAAGAAATTTACAAGTAAAGCCGAAAACTAAGAAAGTTTTTAGTAAAAGTTGCTCgagtgaaataaaaaactatcaattaggggaaaaaagaaaaataaatttggatGATGAAATTGTAgctacaaaaataattaaaaaaaatgttgatgtGAATTCTCAgtacataaaaaagaaaattgtgaaACAGGTTAAcatactaaataaaaaaactaattctaatgaaacgataaaaaattcgtCAACTCTTCAAGAAAGcacgataaataatttgaatttaaataccAAGAAAGAAGTTTTAATGGAAGATCCTGATCTTCCAGCAGGTTGGAAAAGAGTTGTTTTCAAAAGATACGAAGGTacaccaaaagaaaaaaaaattgtttacattcacagtcccaatgggaaaaaatttcaatttaaatggAAACTTAAAAGATATTTAGAACAAACTAAATCAAAACTCAATCCTGAGCAATTTCATTTTGGTTTATATAAAAGGTCTAAACCGTATACAGTGCCTTCTGTAcctgaaaatgaagaaaaaatgttGTCGGAAAATGTTCAGTTAGAAACAGACAAttccattattaaaattgatccGGACAAAGAAGAATCATTGTCTGAGATAGCTAGCAGCAATGAAGATATTATTTTATCTGAAACAGaCACTTCAAAATTCGACCCCAACAATGCTCCCAAGTTTAAAGATCCTACATTGCCTCCCGGTTGGAAAAGATGTATTAAAATTCGATCGTGTGGGAAAAGCGCTGGGAGAATGGAAGTTATCATCGTCAGTCCGGATGGTAAAAGACACAGATCTAAGAAACAATTAGAAAATTACatattgaaaaacaaattgaatttcaattcggaggattttgatttttcggtatttggaaaaacgaaaaagaccAACAACAATTTAATAGTCGAATCGAAGGATACGTcgaacgtttcgaaaaaaaaacctaaacctTCTTTGTCTTTGAGTGATAGGCCAGTCCCCGATTTGGATATAAACGGATTAAAAAGTGCAAACATAACCAGAGAAAGCGAAATGATTAACACAgtGAACGGTATTATGGTTTCCTGCGACTTATCGTCTAGCAGAACAGAACGAAGACTCAGATTACCTAAAAACGaacatgaaaaattattgaaaaactttttagagTCGCAAAACGATGCGGATGCGGATGGGGATGATGCCCGTAAAACCAAAGAATTCTTAAAAGAACTTTCATCGAGAGCGTATAAGAACTCGGTGAGTCCAGAAGCGGGTTTGCAGTATGACGACATAGCTAATCTGGTCGATAAATCTCAATGTTTGTCCTCGTTGAAAACTTTAATACCCAAAAAAATGACATACAAagaatatataaaattgaatCGCCCTAAACATTTCATGTCGTTtacataa
- Protein Sequence
- MKSSEKVNEKIGTTTQIRSSLSSAVNKSSYLLNQISKLSADHDVTVSGTMIKVTYKKALKHHFSSPKFFDRYNLNDEILSRKSMSTFVNKLDSQNIQSGTKGTFLSRNKVCGDNIILSENKPAYIRKDIKHSLFHSTPKSNLDGCERDKREFVNELSFIVELDRKNHKKNPHISIFQPKPTFAMDSNHPATSYSGFNSKPPQLKMNSDEISSRNSIKIPKGITIIRLKGNTSTKNGDSSNIERNLQVKPKTKKVFSKSCSSEIKNYQLGEKRKINLDDEIVATKIIKKNVDVNSQYIKKKIVKQVNILNKKTNSNETIKNSSTLQESTINNLNLNTKKEVLMEDPDLPAGWKRVVFKRYEGTPKEKKIVYIHSPNGKKFQFKWKLKRYLEQTKSKLNPEQFHFGLYKRSKPYTVPSVPENEEKMLSENVQLETDNSIIKIDPDKEESLSEIASSNEDIILSETDTSKFDPNNAPKFKDPTLPPGWKRCIKIRSCGKSAGRMEVIIVSPDGKRHRSKKQLENYILKNKLNFNSEDFDFSVFGKTKKTNNNLIVESKDTSNVSKKKPKPSLSLSDRPVPDLDINGLKSANITRESEMINTVNGIMVSCDLSSSRTERRLRLPKNEHEKLLKNFLESQNDADADGDDARKTKEFLKELSSRAYKNSVSPEAGLQYDDIANLVDKSQCLSSLKTLIPKKMTYKEYIKLNRPKHFMSFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -