Phum003126.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000006295.1
- Location
- NW:173114-175904[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-113 3.8e-109 363.9 27.2 1 300 31 320 31 320 0.98 2 2 0.016 1.7e+02 0.5 5.2 120 171 318 369 317 395 0.67
Sequence Information
- Coding Sequence
- ATGGAAAGTTGTGCTCTTGTAAGTGGAAGAAGGCGCATTGCAACTAAACATTCAGTTGAAGATCAAGCTTTAGATCAAATAGCCAAAGAGGCTGAAGCAAGGTTGACTGCACGAAGGCAAGCTAGAGTAGAAGCAAGAGAAATTCGATTGAGGGAATTAGAACGTCAACAAAAAGAGCAAGAAGAAAATGCAGATAGAGTGTATGATATGTCGCATTCTGGTGATAACACTATGAGACCTGGAAGAGTTTCCAATGCTGCAATGGTTAGTGGTAAAGATAGGCAAAACTCATTCATAAACAATTACTATGGAAGCAGAAGGAGTTCTGATGATTCAAACGAAGATGGGTCATATTGTTTAAGAGATGTTAAgCATGAGTTAAAAGAAGTTGATGAAAAGTTTAGAAAAGCTATGATAGCAAATGCTCAATTGGATAATGAAAAATCTGAATTGGTTTATCAAGTTGAATTACTAAAAGATAAGTTGGAAGAATTAGAAGAAAGCCACATAcagCTTCAGAAAGAAAATCGAGATAAATGTAGGGAACATGAACAACTTAAAAGAGTTGCtttgaaattaaaagatgATTTAGTATCTTACAAAAGTCAACTTGAAGAACGTGACAGACTTATTGCTAATTATGGGCTGATGATAGTTGGtggagaagatgaagaaggtcCTTCAGAAAGAGCTTTGGTAACTGTTGAAACTGCAGATTTGCTTCAGAAAGTTGGGGAAGGATCACTAGatgttcgattaaaaaaaattgtagaagAAAGAAATGAGTTGTTTGACGAAGTTAgacatttaaaattagaattagaagaagaaaaaagtaaaagaaggaTAGATGGTAAAAGTGGGTATTCTGCTGCTAACGGACTTATAGACGAGGAAACTAGTAAGATCATGAGCGATTAtagatttaaattacaaaaagcaGAACAAGATGTGTCCACATTGCAGGCcactgTGGCAAGACTTGAAAGTCAAGTTATCCGTTATAAGTCAGCTGCTGAATCTtcagaaaaagcagaagacgaacttaaaatagaaaaaagaaaattgcaaAGAGAGaacAGAGAGTCGATTGCAAGAATAGAAGAATTAGAAACTGCAAATTCGCATCTTCAAAGACGAATGGACAAATTGAAAAACGCCAAATCTACTTTATTAAAAGaactttaa
- Protein Sequence
- MESCALVSGRRRIATKHSVEDQALDQIAKEAEARLTARRQARVEAREIRLRELERQQKEQEENADRVYDMSHSGDNTMRPGRVSNAAMVSGKDRQNSFINNYYGSRRSSDDSNEDGSYCLRDVKHELKEVDEKFRKAMIANAQLDNEKSELVYQVELLKDKLEELEESHIQLQKENRDKCREHEQLKRVALKLKDDLVSYKSQLEERDRLIANYGLMIVGGEDEEGPSERALVTVETADLLQKVGEGSLDVRLKKIVEERNELFDEVRHLKLELEEEKSKRRIDGKSGYSAANGLIDEETSKIMSDYRFKLQKAEQDVSTLQATVARLESQVIRYKSAAESSEKAEDELKIEKRKLQRENRESIARIEELETANSHLQRRMDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -