Phum002468.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- TFIP11
- Assembly
- GCA_000006295.1
- Location
- NW:723797-727190[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.82 4.4e+03 -3.8 0.0 48 61 197 210 176 220 0.60 2 3 5.3e-90 2.9e-86 288.8 20.1 1 275 367 637 367 637 0.96 3 3 0.25 1.4e+03 -2.1 0.0 156 189 648 680 642 688 0.69
Sequence Information
- Coding Sequence
- ATGTCGGAGGACGAGGTTGAAAGATTTGAAATTACTGATTACGATTTGGAAAATGAATTCGGTTTCAAAAGGACTAAGATAAGtaaaaacgaaagaatttATGGTATTTGGGCGGAAAATGAAAGCAGCGGAGATGAAGAAGCCAGCAGTAGGCGTCCCTCTTTTAGGGGGTCTAAGAAACCTAAAAATTACACGGCTCCCATCGGTTTTGTCGCGGGAGGAATTCAACAGTCTgACAGAGATGATTCTGGTATTAAATCATCGAAAATgcgtataaaaaattcttcatcTGATGAGAGTGATAATGATGCTCCAAGGATGAATAATGAAATCGCtggaatgagaaagaaaaaaacatttgtgaATAAAACAATGCAAAAAGGAGTTGGCAATTGGGAAAAGCATACCAAAGGAATTGGAGCAAAATTATTGCTTCAAATGGGTTATGAACCTGGTAAGGGTCTTGGTAAACAGCTACAAGGTATTAATGCTCCCATTGAAGCAAAATTAAGAAAAGGAAGAGGTGCAATTGGTGCTTACGGTCCAGAAgctACTCAAAAAATTGCAGAACTTCAAACCAatgataaagataaaaaagaagTTACTCAAAAACTTTCAAGATGGAGGAAAAATGATGAAACTGCTAACAAACAAGTtaaatacatatttaaaaGTATAGACGAAGTAATCGAGCAAGGAAACGATAAGCCTTCTTTTACTGATGCAGGAACAATGTCAAAAGTTAAAGTCATTGATATGACTGGTCCACAACAAAGAGTTTTATCAGGATACCATGCAATTTCGAGGCAGCAAAGACCTTCAGACGAATGGGAAACTagaaaggaaatgaaatttgCCAATTTTGCATTACCCGAGCTTCAACACAATCTTAATCTTTTAGTCGATATGTGTGaacagGATATTATACAGAATGACAGGAAGTATAAATATTCGAGTGATAAAATAGTCATGCTACAACATGAAACAGTTCagttggaaaaaatttgtagTAATGaagaaatagaaataaataaattggatAAATTTATATCTATAATCGAAGAAATGATTAATTCGAGTCAAAGCAACACATTGTCTTTGGATAGAGTTGTTTTTGTGCTCAAACAATTGCAAGAAAACTATTACGAAGAATATAAACTTTACGACGTTGCCGAACTTGCAACAACCATTGCCACgccgttaattaaaaattatttgaaaaattggcAACCGTTGGTGAATCCGGAAGAACCCATCGAGTTGATTAAAGAATGGAAAAACATACTGGAAAGTGATCACGGAAGCGTCATGTCAAGTCTTTCGAATCAAGATCCATTTGGAAAATTAGTTTGGCACGCATGGATCCCGTCGATAAGATTTGCAATCACtaatTGGGAATGTAGGAAACCGGAACCCGTTGTCAAACTCGTGGATACGTGGATATCGATACTACCACGTTGGATTATGGATAACGTTTTagaacaattaattttatcgagGATAACTTTATTCGTTCACGAATGGGATCCAATGACGGATACGATTCCGATCCACGCGTGGATTCATCCGTGGTTGCCTCTCCTCAatACTCGTTTGGATTCTGTGATATATCCAATGATTAGACATAAACTAAGTTTGGCCTTGGCAGCATGGCATCCGAGCGACAGATCGGCAAAATACATGCTATTACCTTGGAATAATGTTTTTAGCAAAGGAGACATGGATTCGTTTTTAGTAAGAAATATTTTACCCAAATTGGGTCAAATATTAAATGAGTTTATCATAAATCCACAACATCAAGTTCTCGATGAACATTGGAAGTGGGTTATGGAATGGGAAGAACTAATGCCCGTACACTCGATGGCTGGACTattggaaaaacatttttttccaaaatggtTGCAAGTTTTATCGATGTGGTTAAATCACACTCCGAATTACGATCAGGTGACAAGTTGGTACATCGGTTGGAAAAGTCAATTTTCAGATGCTCTGTTGAAGCAACCTAACATTAAGGaacaATTTAAACAAGCGCTGGAATTGATGAACAGATCCGTCGGTAACGGACAAATTCCAGGAGCGATGGAATCATTGTCTTATTTGAAAAACGTCGAACGCGACACTTCGACATCTTCTAATCCCACGTCGTCGGCAAGGTTTCAGTCGTTGCAAGATGCTGTTCGTACGGGTGGACAAGCGGCCGTTTCCGGTTACAAAGCACTTTTTGCAAAACGttgcgaagaaaaaaatataattttcgtaCCCATACCGAATAAAAGTTACGAAGGGAAACAAGTGTACAGGTGCGGGAGCATTCAAGTTTACATAGATCGAAACGTCGTTTTCGTTTCGCAAAATGGTGGTGCCACGTGGATTCCGCAATCATTGGGTACGGCATTGGACAtggcggaaaaataa
- Protein Sequence
- MSEDEVERFEITDYDLENEFGFKRTKISKNERIYGIWAENESSGDEEASSRRPSFRGSKKPKNYTAPIGFVAGGIQQSDRDDSGIKSSKMRIKNSSSDESDNDAPRMNNEIAGMRKKKTFVNKTMQKGVGNWEKHTKGIGAKLLLQMGYEPGKGLGKQLQGINAPIEAKLRKGRGAIGAYGPEATQKIAELQTNDKDKKEVTQKLSRWRKNDETANKQVKYIFKSIDEVIEQGNDKPSFTDAGTMSKVKVIDMTGPQQRVLSGYHAISRQQRPSDEWETRKEMKFANFALPELQHNLNLLVDMCEQDIIQNDRKYKYSSDKIVMLQHETVQLEKICSNEEIEINKLDKFISIIEEMINSSQSNTLSLDRVVFVLKQLQENYYEEYKLYDVAELATTIATPLIKNYLKNWQPLVNPEEPIELIKEWKNILESDHGSVMSSLSNQDPFGKLVWHAWIPSIRFAITNWECRKPEPVVKLVDTWISILPRWIMDNVLEQLILSRITLFVHEWDPMTDTIPIHAWIHPWLPLLNTRLDSVIYPMIRHKLSLALAAWHPSDRSAKYMLLPWNNVFSKGDMDSFLVRNILPKLGQILNEFIINPQHQVLDEHWKWVMEWEELMPVHSMAGLLEKHFFPKWLQVLSMWLNHTPNYDQVTSWYIGWKSQFSDALLKQPNIKEQFKQALELMNRSVGNGQIPGAMESLSYLKNVERDTSTSSNPTSSARFQSLQDAVRTGGQAAVSGYKALFAKRCEEKNIIFVPIPNKSYEGKQVYRCGSIQVYIDRNVVFVSQNGGATWIPQSLGTALDMAEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -