Priv015273.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:784769-786418[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0006 1.9 9.0 0.1 21 44 117 140 110 148 0.82 2 5 0.0022 6.9 7.2 0.2 23 47 147 171 143 176 0.84 3 5 0.0082 26 5.3 0.0 21 43 173 195 170 202 0.90 4 5 0.00021 0.65 10.5 0.1 26 44 206 224 199 229 0.90 5 5 0.9 2.8e+03 -1.2 0.3 27 43 243 259 241 264 0.80
Sequence Information
- Coding Sequence
- ATGCTAACTGCTTATTTTCTTAGACCGAATAACGTTAATTATCTTAAAAACAAAtTTGATGACAGTGAAATACAAGTAGCACCTCAAACAGAAATACAAACCGATGGTAGAATACCACCTGATGATAAAAATCAAGTACATCAATCATTACATCATGATAGAGGAACACATTccattgaaaattataaaaaaataaaatgtacacAATGTAGAAAACGTTTTGATACAGAAGAACAAATGTTTGCCCACCGAGAAAGACACGTTATTGAATCAACATTTGGCTGTGGTGTTTGTCCTAAAAAATTTACAAGTCATAGTAGTTTATGGAAACACATAAAATCACATTCTGGTGAAAGAccttttatttgtgaaatatgTAAAAAAGGCTTTACACAATTGGCAAATTTACAGCGACATCATTTTGTTCATAATGgTTTAAAACCATACCAATGTCCCATTTGtcaaaaatcattttctcAGCATGCCAATATGATTAAACATCAACTATTGCATACTGGTGAAAAACCATTCAAGTGTAAAGTCTGCGATAAATCATTTGCTCaaagagcaaatctaaaaaaacatgaatttaTTCATAGTGGCATAAAGAAATTTAGCTGCTCAATATGTTTTAGGTCTTACGCTCAATCgggaaatttaaaaaaacatttactAGTCCATGAAAAGGAGCAAAACCAAGCACGGGACTTTGTTTTTGTTTATCAATGTACTTATTGCCATACTGTGGTCAACAAGTCAACACAAAATGATGAACATATTAGAACATGCAATAAAGCAATGGCATTATCTGCTATAAATTGTTGCAGTGTACAACATCATGGTCATGGTCGTCATCACGTTGGTGGTGTCGTCAGTATTGGTGGTGGTAGTGGTGGTGTTATTAAACAGGAAAAACATACAGAAGTTAAAAAGGAACAACCAGAACCACATGAGACTGATGAATCTAATTTATCCAATGGTGATATTACCGGAAAATTATTCAAGAGTTAA
- Protein Sequence
- MLTAYFLRPNNVNYLKNKFDDSEIQVAPQTEIQTDGRIPPDDKNQVHQSLHHDRGTHSIENYKKIKCTQCRKRFDTEEQMFAHRERHVIESTFGCGVCPKKFTSHSSLWKHIKSHSGERPFICEICKKGFTQLANLQRHHFVHNGLKPYQCPICQKSFSQHANMIKHQLLHTGEKPFKCKVCDKSFAQRANLKKHEFIHSGIKKFSCSICFRSYAQSGNLKKHLLVHEKEQNQARDFVFVYQCTYCHTVVNKSTQNDEHIRTCNKAMALSAINCCSVQHHGHGRHHVGGVVSIGGGSGGVIKQEKHTEVKKEQPEPHETDESNLSNGDITGKLFKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164314;
- 90% Identity
- iTF_01164314;
- 80% Identity
- iTF_01164314;