Basic Information

Insect: Pedicia rivosa
Gene Symbol: -
Assembly: GCA_963082725.1
Location: OY720151.1:39501888-39530524[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0045 14 6.2 0.0 21 47 563 589 559 594 0.86

2 12 0.00034 1.1 9.8 0.1 21 48 591 618 588 623 0.86

3 12 0.023 72 3.9 0.1 21 47 619 645 617 650 0.86

4 12 0.022 70 3.9 0.0 21 48 647 674 644 679 0.86

5 12 0.79 2.5e+03 -1.0 0.1 21 31 675 685 671 687 0.87

6 12 0.022 68 4.0 0.1 21 46 960 985 956 992 0.85

7 12 0.035 1.1e+02 3.3 0.1 22 47 989 1014 987 1019 0.87

8 12 0.0095 30 5.1 0.1 21 52 1016 1047 1012 1048 0.93

9 12 0.024 74 3.9 0.1 23 48 1046 1071 1043 1076 0.84

10 12 0.067 2.1e+02 2.4 0.1 21 44 1072 1095 1070 1099 0.86

11 12 0.00041 1.3 9.5 0.2 21 47 1100 1126 1097 1131 0.87

12 12 0.016 49 4.4 0.2 21 45 1128 1152 1126 1155 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0045	14	6.2	0.0	21	47	563	589	559	594	0.86
2	12	0.00034	1.1	9.8	0.1	21	48	591	618	588	623	0.86
3	12	0.023	72	3.9	0.1	21	47	619	645	617	650	0.86
4	12	0.022	70	3.9	0.0	21	48	647	674	644	679	0.86
5	12	0.79	2.5e+03	-1.0	0.1	21	31	675	685	671	687	0.87
6	12	0.022	68	4.0	0.1	21	46	960	985	956	992	0.85
7	12	0.035	1.1e+02	3.3	0.1	22	47	989	1014	987	1019	0.87
8	12	0.0095	30	5.1	0.1	21	52	1016	1047	1012	1048	0.93
9	12	0.024	74	3.9	0.1	23	48	1046	1071	1043	1076	0.84
10	12	0.067	2.1e+02	2.4	0.1	21	44	1072	1095	1070	1099	0.86
11	12	0.00041	1.3	9.5	0.2	21	47	1100	1126	1097	1131	0.87
12	12	0.016	49	4.4	0.2	21	45	1128	1152	1126	1155	0.91

Sequence Information

Coding Sequence: ATGGCTTACGAATTATGTcgattttgtattaaaaacaaaGGAACTATTTCTCTATTTAGTAATAAACTAAACGATATTGTCATTTCGGATTTCGTTAACTCTATCACAAAATCACAGgtAAAGGAAGATGATGAATATCCTCAATCTATTTGCAACGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATAAATCTTTGTGAATCATCAGCAACTAAATTTGAggaattattttctattgacATCGtTAAAACTGAATATGAGTTTGTTGATCAGGGTACCTCAATTTTGACCCTATTTGAATCAAATCATGAGAACTATGAAGATGAAATCaagattgaaaaaaataatgaagaaaaagatgatgaGGATGAAATGAATGATGACGATGGTGCTGATGAAAAggataataatataaaagatgaTGATGGAAAGTGTGACGTTGAAATTATTGTTCAAAATGATGCTGATCGAAAGGATAATGCTGGAAAGGCTGATGATGAAAAGGCCGATTACGTTAAAGTACGTGAAACCGACATTGATGTTGACGTTAATAATGAAACAGACAATAATACAGCTTATGacATTGTTCAAAACAAAGAACAGGAAACAATGGACAATATAGACCTACCTATTACAACACCCAATGATCTGAACGATAAGACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACACTATTTGaatcaaataatgaaaactATGAAGATGAAAtcaagaatgaaaaaaataatgaagaaaaagatgatgaCTATGAAATGAATGAATACGATGGTGCTGATCGAAAGGATAATGCTGGAAAGGCTGATGATGAAAAGGCCGATTACGTAAAGGAAGATGATGGATATCCTCAATCCATTTGCAATGACTGTCTGGAAAAGATTGATGTTACACATAACTTAATAAATCTTTGTGAATCATCAGCAACTAAATTTGAggaattattttctattgacatcATCTGTTTTAGTAAAACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACACTATTTGAATCAAATCATGAAAACTATGAAGATCAaattaagaatgaaaaaaataatgaaaaaaaagatgatgaCGATGAAATGATTGATGACTATGGTGCTGATGAAAAggacaataatataaaagatgaTGATGGAAAGTGTGACGATGAAATGAATGTTGAAAATGATGCTGATCGAAAGGATAATGCTGGAACGGCTGATGATGAAAAGGCCGATTACGTAAAGGAAGATGATGGATATCCTCAATCCATTTGCAATGACTGTCTGGAAAAGGCTGATGTTACACATAACTTAATAAATCTTTGTGAATCATCAGCAACTAAATTTGAggaattattttctattgacatcATCTGTTTTAGTAAAACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACACTATTTGAATCAAATCATGAAAACTATGAAGATGAaattaagaatgaaaaaaataatgaagaaaaagatgatgaCCATGAAATTATTGATGACTATGGTGCTGATAAAAAggataataatataaaagatgaTGATGGAAAGTGTGACGATGAAATTAATGTTGAAAATGATGCTGATCGAAAGGATAATGCTGGAAAGGCTGATGATGAAATGGCCGATTACGTGAAAGgCGAAAAACCGTATGAATGTACTGTTTGTAACAAGAAATTTGCAGACTCTAGATGTTGGAAACGgcatttattaattcattcagGCGAAAAACCGCATGAATGTACTGTTTGTAACAAGAAATTTTCACAATCTAGTCATTTGAAACGgcatttattaattcattcaggCGAAAAACCGCATGAATGTACTGTTTGTAATAAGAAATTTGCACATACTAGTCAGTTGAAACGgcatttattaattcattcaggCGAAAAACCATATGAATGTACTGTTTGTAACAAGAAATTTACAGACTCTAAATGTTGGAAACGgcatttattaattcattcaggCGAAAAACCGTATGAATGTACTATCTGTTTTAGTAAGACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACACTATTTGaatcaaataatgaaaactATGAAGATGAAAtcaagaatgaaaaaaataatgaagaaaaagatgatgaCTATGAAATGAATGAATACGATGGTGCTGATCGAAAGGATAATGCTGGAAAGGCTGATGATGAAAAGGCCGATTACATCTGTTTTAGTAAGACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACACTATTTGaatcaaataatgaaaactATGAAGATGAAAtcaagaatgaaaaaaataatgaagataAAGATGATGACTATGAAATGAATGAATACGATGGTGCTGATCGAAAGGATAATGCTGGAAAGGCTGATGATGAAAAGGCCGATTACGTAAAGGAATATGATGGATATCCTCAATCCATTTGCAATGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATAAATCTTTGTGAATCATCAGCAACTAAATTTGAggaattattttctattgacatcATCTGTTTTAGTAAAACTGAATATGAATTTGTTGATCAGGGTACCTCAATTTTGACCCTATTTGAGTCAAATCATGATAACTATGAAGATGAAAtcaagaatgaaaaaaataatgaagaaaaagatgatgaagatgaaatGATTGATGACTATGGTGCTGATAAAAAggataataatataaaagatgaTGATGGAAAGTGTGACGATGAAATTAATGTTGAAAATGATGCTGATCGAATGGATAATGCTAGAAAGGCTGATGATGAAATGGCCGATTACGTGAAGGGCGAAAAACCGCATGAATGCACTGTTTGTAACAAGAAATTTTCACGTTCTAGTCATTTGAAACAgcatttattaattcatttaggCGAAAAACCGTATGAATGTACTGTTTGTAACAGGAAATTTACACAGACTAGTTCTTtaaaacaacatttattaattcattcagGCGAAAAACCGCATGAGTGTACTGTTTGTAACAGGAAATTTGCACAGACTAATActtttaaaaaacatttattaattcattcaggCGCAAAACCATATGAATGTACTGTTTGTAACAAGAAATTTACAGACTCTAGATGTTGGAAACGgcatttattaattcattcaggCGAAAAACCGTATGAATGTACTGTTTGTTACAGGAAATATGCATACACTAGTACTttgaaaaatcatttattaattcattcaagCGAAATACCGCATGAATGTACTGTTTGTAACAGGAAATTTTCACAATCTAATTATTTGAAACGgcatttattaattcattcaggCGAAAAACCGCATGAATGTACTGTTTGTAACAGGAAATTTTCACATTCTAGTTATTTGAAACGgcatttattaattcattcagGTACTTAA
Protein Sequence: MAYELCRFCIKNKGTISLFSNKLNDIVISDFVNSITKSQVKEDDEYPQSICNDCLEKVDVTHNLINLCESSATKFEELFSIDIVKTEYEFVDQGTSILTLFESNHENYEDEIKIEKNNEEKDDEDEMNDDDGADEKDNNIKDDDGKCDVEIIVQNDADRKDNAGKADDEKADYVKVRETDIDVDVNNETDNNTAYDIVQNKEQETMDNIDLPITTPNDLNDKTEYEFVDQGTSILTLFESNNENYEDEIKNEKNNEEKDDDYEMNEYDGADRKDNAGKADDEKADYVKEDDGYPQSICNDCLEKIDVTHNLINLCESSATKFEELFSIDIICFSKTEYEFVDQGTSILTLFESNHENYEDQIKNEKNNEKKDDDDEMIDDYGADEKDNNIKDDDGKCDDEMNVENDADRKDNAGTADDEKADYVKEDDGYPQSICNDCLEKADVTHNLINLCESSATKFEELFSIDIICFSKTEYEFVDQGTSILTLFESNHENYEDEIKNEKNNEEKDDDHEIIDDYGADKKDNNIKDDDGKCDDEINVENDADRKDNAGKADDEMADYVKGEKPYECTVCNKKFADSRCWKRHLLIHSGEKPHECTVCNKKFSQSSHLKRHLLIHSGEKPHECTVCNKKFAHTSQLKRHLLIHSGEKPYECTVCNKKFTDSKCWKRHLLIHSGEKPYECTICFSKTEYEFVDQGTSILTLFESNNENYEDEIKNEKNNEEKDDDYEMNEYDGADRKDNAGKADDEKADYICFSKTEYEFVDQGTSILTLFESNNENYEDEIKNEKNNEDKDDDYEMNEYDGADRKDNAGKADDEKADYVKEYDGYPQSICNDCLEKVDVTHNLINLCESSATKFEELFSIDIICFSKTEYEFVDQGTSILTLFESNHDNYEDEIKNEKNNEEKDDEDEMIDDYGADKKDNNIKDDDGKCDDEINVENDADRMDNARKADDEMADYVKGEKPHECTVCNKKFSRSSHLKQHLLIHLGEKPYECTVCNRKFTQTSSLKQHLLIHSGEKPHECTVCNRKFAQTNTFKKHLLIHSGAKPYECTVCNKKFTDSRCWKRHLLIHSGEKPYECTVCYRKYAYTSTLKNHLLIHSSEIPHECTVCNRKFSQSNYLKRHLLIHSGEKPHECTVCNRKFSHSSYLKRHLLIHSGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01164277;
90% Identity: iTF_01164277;
80% Identity: iTF_01164277;