Priv001160.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- unc-94
- Assembly
- GCA_963082725.1
- Location
- OY720151.1:16116263-16150271[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 34 4.9 0.0 22 43 822 843 819 848 0.91 2 4 0.00022 0.7 10.3 0.0 21 52 849 880 846 880 0.92 3 4 0.00059 1.8 9.0 0.0 22 48 878 904 875 908 0.84 4 4 0.0012 3.8 8.0 0.0 22 43 906 927 902 932 0.91
Sequence Information
- Coding Sequence
- ATGAATGGTCCAATTAGGCAGACTTcctcaacaacaaaaaccacaACATTGACTACTCCTGCCAAATTATATGGTAAAGATTTAAGTGAATATGATGAAATTGATGTAGACGAATTATTGTCACAATTATCGCctgaagaaataaatatattagcTAAGGAAGTTGATCCAGATgaTAGTTTTTTGCCACCAAGTCAAAGACATAGTTATGAATGTGAAAAAGAACCAACTGGACCATTGGatagaaagaaattaattcaTCATATTAATAAACAGGCATTGGAAACACCTGACGTACCTGATTTGGAACCTTATGTTCATGGAATGGTTCGGGGGAAAAAATGGATGGCACCACctcaagaacaaaaattacgAGATGCTGATGAACAAATTGCAATTGACATGGGTGAAGAATATGAACAGGCACTACATGACGCTTCAcaagaagaaattattgaCTTAGCCGCTATCCTTGGTTTCCATTCAATGATGAATCAAGATCAATATCATGCATCACTTTTGAATAAAGGTCAACCAATTGGATTAGGTTGGGATGGTATTACCAAATCAACTAAACCAAAATTGTACCCACAAGATCCGCCAAATTCGACTGACATTGATGAATCTATTAAACGGGTGAAATCAGATGattctaaattaattgaacttaatttgaataatatcaagAATATTTCTGATGAGAAATTTGAGCAATTATTTGAAGCACTAACAGAGAATACACATTTGGAATTATTATCATTGACAAATGTTGGTTTAACAGACAGAACGGCGTCTGTATTAGCTGATGCTATTGAAAGTAATCAAACCCTGAGAGTACTGAATGTTGAAACAAATTTCATCAATACCCCATTAATTGTTAGATTAGTTAAAGCACTTTTAAAAGCTAAAAGTATTGAAGAATTCAGAGCGTCTAATCAGAGATCATCTGTACTgggaaataaaatagaaatggAAATCACTGAATTGGTAGAGAAAAATACATCACTATTGAGATTAGGTCTACATTTGGAATATAACGATGCTCGTCATAGAATTGCTGCACATTTACAACGTAACATTGACAGAAaagaagaaaatcatgATAAGAATATCGATGAAATTGATGATGTTGAATTTGATCCTGATAATATGGTTATACGTGGTGAACcagaaattaataatgatgatggtgatgatgatgatatagCTTATACAAAAGCAGCACCTATTGATTACTCTTCAAATATTCATTCTGTGGAGTTTATAGTATGGCCAAGAGGATctgaaattcataaaatatctTCTGGATTTGAATCAATTAATAGCATGAAATATGTAATTGGTGCAGTTGATGATTCCATGATCAAAATAAAGGCACCCCAGACAATGAAAGAAGACTATTtcaatagaagaaaattttatagcATAAAACTTCAAGCAGTCGTTGATCATGACAAGAAATTTACTGATGTTTGTggtATAGAAGAAGATGATGGTTACCCTCAATGCATTTGCAACGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATCATTCTTTGTGATTCATCAGCAAGTAAATTTGaggaaatattttctattgacATCATTAAAACTGAATATGAATCTGCTGATGAGGGTAATTCAATTTTGACACTATTTGAACCAAACAATGGAAACTATGaagatgaaatgaaaaatgcaaaaaataatgatgatgaaatgaattctgaaaataataataatggaagggatcatgatgatgaaaattatgCCGATGAAATGAATGATGCTAATAATTCTGatgaaaagaataataatgtaaaaggTTATGACAATGGGATTGTTGTTGAAAGTGATGCTGATAAAAAGGATGATGATAAAATTGAGAtaatagagaaagaaaataatattaaattaaatagtaTTGTGAAACGTTCGAACACAacattaaagaataaaatcgCACATATAGCACGAGCACTCATGACTGCCGGAAAAATACCAACACGCAAACGTAGAAGATCAAGTACAGACTCATTATGTTGTACTCCTAAAAGAAAACCCGTTAGTCAAACACCAATAGCTGATTCCAGATACGACCAATTAGGGCTCTGGCCACTTGTGGAAAAAATAGAAGAAGATGATGGTTACCCTCAATGCATTTGCAACGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATCATTCTTTGTGATTCATCAGCAAGTAAATTTGaggaaatattttctattgacATCATTAAAACTGAATATGAATTTGCTGATGAGGAGAATTCAATTTTGACACTAATTGAACCAAACTATGaagatgaaatgaaaattgcaaaaaataatgatgatgaaaattatgCCGATGAAATGAATTATGCCAATAATTCTGatgaaaagaataataatgtaaaaggTTATGACAATGGGATTGTTGTTGAAAtCGAAAAACCCCACGGATGTACTATTTGTGAGAAGAAATTTGCAAAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTACAGATTCTTCTAGTTtaagaaaacatttattaCTTCATTCAGtCGAAAAACCCCACGGATGTACTATTTGTGAGAAGAAATTTGCACAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGtCGAAAAACCCCACGGATGTACTATTTGTGAGAAGAAATTTGCACAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGGTGCATAG
- Protein Sequence
- MNGPIRQTSSTTKTTTLTTPAKLYGKDLSEYDEIDVDELLSQLSPEEINILAKEVDPDDSFLPPSQRHSYECEKEPTGPLDRKKLIHHINKQALETPDVPDLEPYVHGMVRGKKWMAPPQEQKLRDADEQIAIDMGEEYEQALHDASQEEIIDLAAILGFHSMMNQDQYHASLLNKGQPIGLGWDGITKSTKPKLYPQDPPNSTDIDESIKRVKSDDSKLIELNLNNIKNISDEKFEQLFEALTENTHLELLSLTNVGLTDRTASVLADAIESNQTLRVLNVETNFINTPLIVRLVKALLKAKSIEEFRASNQRSSVLGNKIEMEITELVEKNTSLLRLGLHLEYNDARHRIAAHLQRNIDRKEENHDKNIDEIDDVEFDPDNMVIRGEPEINNDDGDDDDIAYTKAAPIDYSSNIHSVEFIVWPRGSEIHKISSGFESINSMKYVIGAVDDSMIKIKAPQTMKEDYFNRRKFYSIKLQAVVDHDKKFTDVCGIEEDDGYPQCICNDCLEKVDVTHNLIILCDSSASKFEEIFSIDIIKTEYESADEGNSILTLFEPNNGNYEDEMKNAKNNDDEMNSENNNNGRDHDDENYADEMNDANNSDEKNNNVKGYDNGIVVESDADKKDDDKIEIIEKENNIKLNSIVKRSNTTLKNKIAHIARALMTAGKIPTRKRRRSSTDSLCCTPKRKPVSQTPIADSRYDQLGLWPLVEKIEEDDGYPQCICNDCLEKVDVTHNLIILCDSSASKFEEIFSIDIIKTEYEFADEENSILTLIEPNYEDEMKIAKNNDDENYADEMNYANNSDEKNNNVKGYDNGIVVEIEKPHGCTICEKKFAKSSDLKRHSLIHSGEKPHGCTICEKKFTDSSSLRKHLLLHSVEKPHGCTICEKKFAQSSDLKRHSLIHSVEKPHGCTICEKKFAQSSDLKRHSLIHSGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164450;
- 90% Identity
- iTF_01164450;
- 80% Identity
- iTF_01164450;