Basic Information

Insect: Pedicia rivosa
Gene Symbol: -
Assembly: GCA_963082725.1
Location: OY720151.1:16072934-16092525[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00088 2.7 8.4 0.0 21 43 557 579 552 584 0.91

2 5 0.0012 3.7 8.0 0.1 21 43 585 607 581 612 0.91

3 5 0.00078 2.4 8.6 0.0 21 43 613 635 610 640 0.91

4 5 0.00092 2.9 8.4 0.0 21 45 641 665 638 669 0.91

5 5 0.00082 2.6 8.5 0.0 21 43 669 691 667 696 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00088	2.7	8.4	0.0	21	43	557	579	552	584	0.91
2	5	0.0012	3.7	8.0	0.1	21	43	585	607	581	612	0.91
3	5	0.00078	2.4	8.6	0.0	21	43	613	635	610	640	0.91
4	5	0.00092	2.9	8.4	0.0	21	45	641	665	638	669	0.91
5	5	0.00082	2.6	8.5	0.0	21	43	669	691	667	696	0.91

Sequence Information

Coding Sequence: ATGAAAAATGTAATTGGTGCAGTTGATGATTCCATGATCAAAATAAAGGCACCCCAGACAATGAAAGAAGACTATTtcaatagaagaaaattttatagcATAAAACTTCAAGCAGTCGTTGATCATGACAAGAAATTTACTGATGTTTGTggtATAGAAGAAGATGATGGTTACCCTCAATGCATTTGCAACGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATCATTCTTTGTGATTCATCAGCAAGTAAATTTGaggaaatattttctattgacATCATtaaaactGAATATGAATCTGCTGATGAGGGTAATTCAATTTTGACACTATTTGAACCAAACAATGAAAACTATGaagatgaaatgaaaaatgcaaaaaataatgatgatgaaatgaattctgaaaataataataatggaagggatcatgatgatgaaaattatgCCGATGAAATGAATGATGCTAATAATTCTGatgaaaagaataataatgtaaaaggTTATGACAATGGGATTGTTGTTGAAAGTGATGCTGATAAAAAGGATGATGATAATTACGATTACGAGAAGAACGATAATAAGAATGAGAtaatagagaaagaaaatgatattaaattaaatagtaTTGTGAAACGTTCGAACACAacattaaagaataaaatcgGTGGTAAAACTGAATATGAATATGAATCTGCTGATGAGGGTAATTCAGTTTTGACACTATTTGAACCAAACAATGAAAACTATGaagatgaaatgaaaaatgcaaaaaataatgatgatgaaatgaattctgaaaataataataatggaagggatcatgatgatgaaaattataCCGTTGAAATGAATGATGCAAATAATTCTGatgaaaagaataataatgtaaaagtTTATGACAATGGGATTGTTGTTGAAAGTGATGCTGATAAAAAGGATGATAATAAACAAGCAAATTACGAAAAGAACGATGATAAGAATGAGAtaatagagaaagaaaatgatattaaattaaatagtaTTGTGAAACGTTCGAACACAacattaaagaataaaatcgGTGGAGCTAGAGGTATAGCTAGAACAGATGAACAACGTTTAAAGATAATAGGCGGAATTCCATCTGGCCCCGCCGAGATAGAAGAAGATGATGGTTATCCTCAATGCATTTGCAACGACTGTCTGGAAAAGGTTGATGTTACACATAACTTAATCATTCTTTGTGATTCATCAGCAAGTAAATTTGaggaaatattttctattgacATCATTAAAACTGAATATGAATATGAATCTGCTGATGAGGGTAATTCAATTTTGACACTATTTGAACCAAACAATGAAAACTATGaagatgaaatgaaaaatgcaaaaaataatgatgatgaaatgaattctgaaaataataataatgcaagGGATCGTGATGTTGAATATTATGCCGATGAAATGAATGATGCAAATAATTCtgatgaaaagaataaaaatgtaaaaggtAATGACAATGGGATTGTTGTTGAAAGTGATGCTGATAAAAAGGATGATAATAAACAAGCAAATTACGAGAAGAACGATGATAAAAATGAGAtaatagagaaagaaaatgatattaaattaaatagtaTTTTGAAACGTTCGAACACAacattaaagaataaaatcgGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTGCTCAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTGCTCAATCTTCTCATTTAAAACGCCATTCATTAATTCATTCAGGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTGCTCAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTGCTCAATCTTCTGATTtaaaacaacatttattaattcattcagGCGAAAAACCGCACGGATGTACTATTTGTGAGAAGAAATTTGCTCAATCTTCTGATTTAAAACGACATTCATTAATTCATTCAGGTGCATAG
Protein Sequence: MKNVIGAVDDSMIKIKAPQTMKEDYFNRRKFYSIKLQAVVDHDKKFTDVCGIEEDDGYPQCICNDCLEKVDVTHNLIILCDSSASKFEEIFSIDIIKTEYESADEGNSILTLFEPNNENYEDEMKNAKNNDDEMNSENNNNGRDHDDENYADEMNDANNSDEKNNNVKGYDNGIVVESDADKKDDDNYDYEKNDNKNEIIEKENDIKLNSIVKRSNTTLKNKIGGKTEYEYESADEGNSVLTLFEPNNENYEDEMKNAKNNDDEMNSENNNNGRDHDDENYTVEMNDANNSDEKNNNVKVYDNGIVVESDADKKDDNKQANYEKNDDKNEIIEKENDIKLNSIVKRSNTTLKNKIGGARGIARTDEQRLKIIGGIPSGPAEIEEDDGYPQCICNDCLEKVDVTHNLIILCDSSASKFEEIFSIDIIKTEYEYESADEGNSILTLFEPNNENYEDEMKNAKNNDDEMNSENNNNARDRDVEYYADEMNDANNSDEKNKNVKGNDNGIVVESDADKKDDNKQANYEKNDDKNEIIEKENDIKLNSILKRSNTTLKNKIGEKPHGCTICEKKFAQSSDLKRHSLIHSGEKPHGCTICEKKFAQSSHLKRHSLIHSGEKPHGCTICEKKFAQSSDLKRHSLIHSGEKPHGCTICEKKFAQSSDLKQHLLIHSGEKPHGCTICEKKFAQSSDLKRHSLIHSGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01164396;
90% Identity: iTF_01164396;
80% Identity: iTF_01164396;