Priv009783.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- Mbd2
- Assembly
- GCA_963082725.1
- Location
- OY720153.1:19418170-19420435[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-22 1.3e-18 66.7 0.0 4 73 20 84 17 120 0.80 2 2 0.00033 0.91 9.5 0.1 28 74 107 173 93 176 0.80
Sequence Information
- Coding Sequence
- ATGAATAATATGAATATATCGATTGAAAGTAAAAAGGCAGATTGTTCTGAAAGAAGAGCGATGGAAGCTTGTTCAGCATTGCCTCGCGGGTGGCAGAGAGAGGAAGTATTAAGAAAATCGGGTTTATCAGCAGGAAAAGTTGATGTGTATTATTATAGcCCAGCTggtaaaaaaattgaaaacaaaccACAACTAGCACGTCATTTGGGTGAATCAATGGATATTTCCACATTTGATTATCAGGCTGGAAAACTAGTTACAAATTCACATCAACTACTCCAACGTACagcaatgaaaaaaaaactaattggTACATCAACAGCTGCATTTCGACAACAATTTGATTATAGTCGCGGAATCAGAACAGATGCATCATTAGTCCCACCAATAAGGCAAACAGcatcaatttttaaacaacCAGTTACTGTTTATAAAACACAagaaagtaaagtaaaaacagatttaaaacATGGTCCAcaagaaaaaccaaaacaattattttggGAAAAAAGGATTGAGggATTACGTGCTTGTGATATTGATGGTTCAGAATTTGGGCCTGTTGAATTACCTAAAGGTTTAAAGCCAGTTGGGCCTCATGTTAATGAAGGAACTTTATTACAGTCAATTGCAACTGCATTACATGTTTCGGTACAACCAGTAACTGGACAAACAGCATCTAAATCAGCATTAACAGCTAATTCAAGTGCATTTTTAAATCCAGATCAACCACTTATGCATGCTGTTACAATATCGGAAGATGATATTCGAAGACAAGAGGATCGGGTTGCATtagcaagaaaaaaattacaagatgcattaaaagtttaa
- Protein Sequence
- MNNMNISIESKKADCSERRAMEACSALPRGWQREEVLRKSGLSAGKVDVYYYSPAGKKIENKPQLARHLGESMDISTFDYQAGKLVTNSHQLLQRTAMKKKLIGTSTAAFRQQFDYSRGIRTDASLVPPIRQTASIFKQPVTVYKTQESKVKTDLKHGPQEKPKQLFWEKRIEGLRACDIDGSEFGPVELPKGLKPVGPHVNEGTLLQSIATALHVSVQPVTGQTASKSALTANSSAFLNPDQPLMHAVTISEDDIRRQEDRVALARKKLQDALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -