Priv002420.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963082725.1
- Location
- OY720151.1:31200177-31219189[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.11 1.2e+03 -1.2 0.9 26 79 110 169 106 188 0.61 2 4 0.045 4.9e+02 0.1 0.9 26 156 236 254 210 298 0.52 3 4 1.3e-108 1.4e-104 349.9 35.3 1 299 327 614 327 615 0.94 4 4 0.051 5.6e+02 -0.1 3.3 208 247 632 670 617 689 0.69
Sequence Information
- Coding Sequence
- atggtTCAATTAAAAGTACGAAGTACATTGATTGGTAAAATATCAAGACAGTGGGGACCATCTTTAAGTGATTGTCTAGAAATTGAAGCAACATTTCAAAAGGGTCTTGCTGTAAAGGGTACATGGATAAGTAATTTGGACTGTAATGATAACTCAGCAATAATGGATAacaataatgatgatgatgaagaatttTGGGATTCCAACGAAACaaatgattatgatgatgatgatgttgatgatgatgatgatgatgatgatgatgaggatgatgatgatgatgttgaaataattatatcaTCAGATGTAGATCAACGgaataatattcaaaataaagaaaatgataatgaTCACGGTGATGaagaatttgatttttctgATAGTGAAATAGAAATATTAGAATCAACAGTAACAgataatacaaatataaatgattCTGTATTTCTAAGTAATACagataattcaataattactAAAACATCATCAACCCATTCAACCTATTCAACtctaaataattcaaataataatcaattattatcaGATATAAGTTTTAGTGGTAATTTAATCACTGATAGCAGTGAAGTTTATAATAATGTTAGTGAAGATGATTTATtatcatcaccatcatcaccattaaataataaacctATACTAGATAATTCTAATCAATTGATAAGCTCAACACCGTTAatatcacaacaacaacaacaaaatagtaaagaaaaaaataataatcatcattacgaaaagaaacaacaacatcaaaataattcattaatatcaaattttaatgaaacattaaattcatcacttataaattcaattaaaacaaatgataataattctgatacaacaataaatggattaaattcaacaatatCAGATGAAACAGATAAACGTTATGTTGGAACTTATGATGATGAATGTACAGAAGAGGATGAAGTTATTGTTAATTTCTTAggaaaatcaaatgaaataGCCGAAGCAAGATTAGCAGCCAGACGTCAAGCACGTGCTGAAGCTCGTGAAATACGTATGCGTGAATTAGAGCGACAACAAAAAGAACAGGAACAAAATGCTGATAGAGTATTTGATATGCAAAGTGCTTCAAGTATTGATCCATTATCACGATCACGAATTGTTGTCTTATCATCACCAGCAGCTACAATACGAGGTAATTCAATGTCATCAAGACGTAGTAGTGAAGATTCATTAGAAGAGGAGGGCAGAAGTTTAAGAGATTTACGACATGAAATTaaggatGTAGAGGAAAGATTTCGTAAAGCAATGATAGCAAATGCCCAATTAGATAATGAACGTTCATCACAATCATATcaaatacaattattaaaagataaactTGAAGAAATGGAAGAAGCCCATTCACAATTACAGCGTGAATATAAAGATAAATGCCGAGATCATGATGCCTTAAAACgtaataatgataaattaacagaagaattaaaattagttcAAGGACAATTAACTGAAAGGGATACATTAATCAGTGAACAAGGTTTAGTTATTGTACTTGTTGAAGATTCAAATGGTATTGATGCAAGACGTGCTCTAGTCAGTGTTGAAAATGCACAATTACTGGAAACAACTCAGGATTCTTTAGatgtaagacttaaaaaatttgccgaagaaaaaaaacaattacaaaatgaGGTACAACAACTTCAACAACAATTAACTGATGCTAGAACGCAAGGACGTCGATCAGGTTCTATTAATGGTCCACTAGGAGAGGATGATATTGAAGATGTTCAaagAGAAGCGAATAAATTAATAGCcgattataaatataaatttcaaaaagcTGAACAAGAAATAGCTAGTCTACAAGCAAGTTTATCACGATCAGAAACACAAGTCATTAGATACAAAAGTACAGCGGAAGCTGCTGAAAAAGCTGAAGGTGAATTAAgaattgaaagaagaaaattacaacgagagaATCGTGAAGCAACAGAACGTGTTGAAGAATTGGAAACAGCCaataatcatttaataaaacgTTTGGATAAACTTAAAAATGCTAAAAGTGCATTATTAAAAGAACTCTGA
- Protein Sequence
- MVQLKVRSTLIGKISRQWGPSLSDCLEIEATFQKGLAVKGTWISNLDCNDNSAIMDNNNDDDEEFWDSNETNDYDDDDVDDDDDDDDDEDDDDDVEIIISSDVDQRNNIQNKENDNDHGDEEFDFSDSEIEILESTVTDNTNINDSVFLSNTDNSIITKTSSTHSTYSTLNNSNNNQLLSDISFSGNLITDSSEVYNNVSEDDLLSSPSSPLNNKPILDNSNQLISSTPLISQQQQQNSKEKNNNHHYEKKQQHQNNSLISNFNETLNSSLINSIKTNDNNSDTTINGLNSTISDETDKRYVGTYDDECTEEDEVIVNFLGKSNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQSASSIDPLSRSRIVVLSSPAATIRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKDVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEEAHSQLQREYKDKCRDHDALKRNNDKLTEELKLVQGQLTERDTLISEQGLVIVLVEDSNGIDARRALVSVENAQLLETTQDSLDVRLKKFAEEKKQLQNEVQQLQQQLTDARTQGRRSGSINGPLGEDDIEDVQREANKLIADYKYKFQKAEQEIASLQASLSRSETQVIRYKSTAEAAEKAEGELRIERRKLQRENREATERVEELETANNHLIKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -