Priv014559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
sip1
Assembly
GCA_963082725.1
Location
OY720154.1:35568113-35571002[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.3e-94 1.4e-90 304.0 11.5 1 275 392 658 392 658 0.98
2 2 0.35 3.8e+03 -2.5 0.1 245 269 673 697 663 703 0.65

Sequence Information

Coding Sequence
ATGTCTGATACTGAATATGAAAGATTTGAAATAACAGATTATGATTtggaaaatgaatttaatccAAATCGgcaaagaaggaaaaatacaaaaaatcaacaaatttatGGAATTTGGGCTTCTGATAGCGATAATGAAGAAGCAGAAGATTTTAGTCGTGGAAGAAAACGAGGTGCTCAAAAGTCAAAAGATTATACAGCCCCTGTTTCTTTTGTCTGTGGTGGAGTTCAACAATCTggtaaaaaagaagaaattcaaAATCGTGAAAAATCACCAATTTCAGATGAAgaagATGAATTACGACCAAGATTTGGTGGAATTAAAGGTGGAACCTCCAGTGAATCAGATGGAGAAGTAGAACCAGAAATTACAATGCGTTCGACAGCTGGATTTAGAAAAGCAAATCCAAATAATGTCACAATATCTAAAGGCGTTGGACAATGGGAACAACATACTAGAGGTATTGGTGCTAAGCTTTTACTTCAAATGGGCTACGAGCCTGGAAGAGGTTTAGGAAAAGATTTGCAAGGAATTTCGACACCCGTTCAAGCGGCTGTTAGAAAAGGACGTGGGGCGATTGGAGCTTACGGACCTGAGAAAAATGCTAGTGTTGAAGGAAAAaatattaaaaaacaaattgatgaggatgaaaaagaaaccaaagagtttaaagaaaaaatgcaCCAATGGAGAAAAGATGCACCaacaaaaaaagggaaaaacacAAGATATTATTATAGAAGTGTTGAAGAAATTAtcgaaaaaggaaaaaagccGGGTTATAATTTTCCCGATAAGTTAAgTAAAAAATTGGGTAATGTTGTTGTAATTGATATGACTGGCCCAGAGAAACGAGTTCTTAGTGGATACCATGCATTGGGGCAAACAAAAGTTGCTGATGAAACATTATATGAACATCGGCAGACAAAGAAATGTACTAATTTTGCTTTACCAGAATTGATgcataatttgaatttaattgttgatTTATGTGAACAGgaaataatttcaattgacAAAACCCAACGAACTGCAAAAGATCgtgaaattgttttaatacaagaaaaagaaaaattaaacagaattgttgatttagaaaaaaatcatataaatacATTGGAAGAAGCAATGGAATTAGTTGAGCGCTTGGTTGCCCCAGAAGAACAATTAGCACTGGAAGACGCTGAAAAAATTTTCTCAAAACTTCAAGCTGATTTCCCCGCTGAATATAAAGAATTTGGACTTGGTGACTTAGCACCAGGAATAATTGCTCCAATGtttagttataaaataaaagattggATACCTTTGGAGGAACCAACAAAACATGTTGAAACGCTTAAACGTTGGAAAACAATATTAGGAATGCAtcaaacacaaacaacaaatgtTTTTGATCCGTATGCTGCCCTTGTGTGGTCAGGTTTAATTCCTAGTTTTCGTGCAACAACAACTGGATGGAATCCACGAGTTCATCAACCAATGGCAGCGCTATTAGACGCATGGGCCCCACTTCTACCTACTTGGATACTTGACACAATTTTGGAGCAAATGGTTTTGCCTAGGTTACAATCTTGTGTTGAAAATTGGGATCCATTAACCGATACAACACCAATTCATGTATGGATTCATCCTTGGACCGGTTTGTTAGGACATAAAATGGATgaaaatatttatcatattATTCGTTTAAAATTGGGTAATGCCCTAAAAGCCTGGATACCACAAGATCGTTCAGCTCGTGCAATGCTAACTCCTTGGAAAACAGTATTTGCTGATGGTGATATGCAAACTTTTCTGATCAAACATATTATTCCGAAATTACAATTATGTTTAtcagaattaataataaatccaTTACAACAAGATTTAGAATTATGGAATCAGGTTTGGGAATGGAATGAACTGATATCATGTATTATGATGAGTCAAATACTTGATAAATTCTTTTTCCCAAAATGGGTACAAACGTTAGTTATTTGGTTAAATCAATCTCCCAATTTAGATCAAGTATCACGATGGTATTCCGGATGGAAAAGCCTCTTTTCCGACGACATCCTAATGCAGACAAATATTAAAGaaCATTTTAGACGTGCTCTGGAATTAATGCACCGTTCTACAGGTGGAGGAGTACCAATTATTACAATGGAAGCTGTTCCTGTTCAAAATGCTGCACCACCAAAATTAATGGACTTACAAATTCCCCCACCCTCAATGGAATTTAAAGTTGAATTCAAAGATCTTGTTTCACAGAAATGTTCCGAACGAGGAATTATATTTGCTCCTATGCCAGGACGACGAGAAATGGGAAAACAAGTTTATCGTGTTGGAAAAATGTTTTGCTATATTGATCGATCTGTTATTATGATAAGTGATGGAAGTTTTTCTAATTGGGCTCCAATCTCTTTACCGATACTTCTTGAAAAATCAATTACtggataa
Protein Sequence
MSDTEYERFEITDYDLENEFNPNRQRRKNTKNQQIYGIWASDSDNEEAEDFSRGRKRGAQKSKDYTAPVSFVCGGVQQSGKKEEIQNREKSPISDEEDELRPRFGGIKGGTSSESDGEVEPEITMRSTAGFRKANPNNVTISKGVGQWEQHTRGIGAKLLLQMGYEPGRGLGKDLQGISTPVQAAVRKGRGAIGAYGPEKNASVEGKNIKKQIDEDEKETKEFKEKMHQWRKDAPTKKGKNTRYYYRSVEEIIEKGKKPGYNFPDKLSKKLGNVVVIDMTGPEKRVLSGYHALGQTKVADETLYEHRQTKKCTNFALPELMHNLNLIVDLCEQEIISIDKTQRTAKDREIVLIQEKEKLNRIVDLEKNHINTLEEAMELVERLVAPEEQLALEDAEKIFSKLQADFPAEYKEFGLGDLAPGIIAPMFSYKIKDWIPLEEPTKHVETLKRWKTILGMHQTQTTNVFDPYAALVWSGLIPSFRATTTGWNPRVHQPMAALLDAWAPLLPTWILDTILEQMVLPRLQSCVENWDPLTDTTPIHVWIHPWTGLLGHKMDENIYHIIRLKLGNALKAWIPQDRSARAMLTPWKTVFADGDMQTFLIKHIIPKLQLCLSELIINPLQQDLELWNQVWEWNELISCIMMSQILDKFFFPKWVQTLVIWLNQSPNLDQVSRWYSGWKSLFSDDILMQTNIKEHFRRALELMHRSTGGGVPIITMEAVPVQNAAPPKLMDLQIPPPSMEFKVEFKDLVSQKCSERGIIFAPMPGRREMGKQVYRVGKMFCYIDRSVIMISDGSFSNWAPISLPILLEKSITG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-