Pder002988.3
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- zfy1
- Assembly
- GCA_963942485.1
- Location
- OZ012625.1:22446149-22447280[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.6e-05 0.53 10.9 0.1 23 46 177 199 169 201 0.86 2 4 6.1e-05 0.38 11.4 0.0 20 43 200 223 198 228 0.91 3 4 0.14 8.6e+02 0.6 0.2 27 45 264 279 258 292 0.77 4 4 0.021 1.3e+02 3.3 0.1 20 49 310 339 297 340 0.86
Sequence Information
- Coding Sequence
- ATGTCCAATTTATCCATGGAAAATATATGTAGAACATGTTTACGTTCACCTGAAAAGATGTTCCCATTAATAGACAActcagaaataataaataggaTAGAAATAATATCATCTATACAGGTATCAGGAAATGATCATTTGCCATCTACCATATGCCAAGAATGTATAAACAACGTAAATATGCTGTATAACtttcgaaaagtaattattaatagTCATAAGGAATTAAAAGAACGATATGCTATTGTACAAAAAACCATACTTAACTCAAAGCACAACGTGATAGAAGAAGAAAACGAAGACGAGCTCGGTAGGAACGTTAAAAATGAACTACAACAAGAAGATGAAGATATGGACGATATTAGAGACCCCCTTAAAAGTGATAATGATAAAAGTGAAAATACAAAAGAAACTAGCGAAGCCGTAAAACGAGCTATTGCCACAAAGAAAATACACAAATGTAACGCTTGCCAACTCACATTCACATCTAGAATTAAACTATATAATCATAGACGTAATCTACATATAGCTCCTGGAATCTGCAACATTTGTGGGATGGTTGTAAGAGCAGACAATTTAAAAAGACACGTTCAACTACACTCCGAAGGGCCAGCAAAGTGCAAATTATGTGgtaaagtgtttaaaaatTCAGAGTCTCTTCGAGGGCATTCGCTCATACACAAAGGCGTTACATTTACATGTGAGAAATGTGGAAAAACATCAAAAGTGAAATCAGAACATAAAAGACACATGAAAACACACGTCGATccagaaattggaaaaattatgtGTACGATTTGTGGGAAAAGGGTGCGAGATTTAAGGAAACACATGCATAGTCATACAGGCGAACGACCCTATTTATGCTCGTATTGTAGCAAAGGGTTTACTAGTCCCTATGCATTGAAAGTGCATACTAGGCAGCACACGAATGAAAAGCCATTTATTTGTGAATATTGTCCGATGGCATTCGCGCAAAAAGTGTCTCTTACAACACATATTAAATCTAAACATTATTCGTGA
- Protein Sequence
- MSNLSMENICRTCLRSPEKMFPLIDNSEIINRIEIISSIQVSGNDHLPSTICQECINNVNMLYNFRKVIINSHKELKERYAIVQKTILNSKHNVIEEENEDELGRNVKNELQQEDEDMDDIRDPLKSDNDKSENTKETSEAVKRAIATKKIHKCNACQLTFTSRIKLYNHRRNLHIAPGICNICGMVVRADNLKRHVQLHSEGPAKCKLCGKVFKNSESLRGHSLIHKGVTFTCEKCGKTSKVKSEHKRHMKTHVDPEIGKIMCTICGKRVRDLRKHMHSHTGERPYLCSYCSKGFTSPYALKVHTRQHTNEKPFICEYCPMAFAQKVSLTTHIKSKHYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01163486;
- 90% Identity
- iTF_01163486;
- 80% Identity
- iTF_01163486;