Pder012076.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- TFDP1_1
- Assembly
- GCA_963942485.1
- Location
- OZ012627.1:29065855-29073177[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-24 9.2e-21 73.8 0.1 2 65 161 240 160 240 0.98 2 2 1.5 1.2e+04 -3.5 0.1 42 53 341 352 339 353 0.77
Sequence Information
- Coding Sequence
- ATGACACAACAAAATACTACGACCAACTTTTTAATACAAGGACACAACgGCCAAATGGTCAAGCTGATCCAGGCCACCAAACCCATCAGTGGAATCATAACGACTTCCATGTCGGGGCAGccagtaaaaatttttaaaaccggAGTCAGTAGTCCCGAAACATCACAGGGAACTCAGATAATCAGAACTTTGTCTTTACCACCAACTAAAATAGTAACAAAACCGGTGCCTATTCATGTAGGCAATCTACCAAAAGTAACAactaaaacgataaaaattacACCGTCACAAAtacaAAGTTTTAAAATGCTGCACACAACCCCCAAATTACAAACAGTATCAGGTCCTCTTGCATCCACAATATCAGGATCCCAAGGCACCAAAATAATGTCTCCTCATATACTTTCAAGAAAACGGATGGATCCTCTAGAATTAGATTACACGCCCGAGACGAAACGTGCCAGAAAGTCAGAAAAAGTTGGCAAAGGCTTACGACACTTTTCCATGAAAGTATGTGAAAAAGTCAAACAAAAAGGCACCACAACGTACAATGAAGTCGCCGATGAGCTTGTTGGCGAATTCACACGCTCTTCCAGTCCTAATACGCTAGCAGATCAGTATGACCAAAAGAATATTAGGAGAAGAGTTTACGATGCTTTGAATGTTCTCATGGCGATGAACATAATTTCCAAAGAGAAGAAGGAAATTCGATGGATAGGTCTTCCTACCAATTCGTTCCAAGAGTGCCATCAATTACAAAggaaaattgaagaaaaagaaaagagCATTAAGCTCAAACAGAACCAGTTAAACGATCTTATTCTTAATCAAATAGCCTTTAAAAATTTGGCTCAACGAAACCGAGAAACTGAAAAAGCTATTGGTCCCCCACCAATTAACTCCTACATACAGTTGCCTTTCCTTGTGGTGAACACAAATAAAAAGGCTGTTATTAATTGTAGTATCTCTAATGATAAGATGGAGTATCTATTTCAATTTAGTGACCGATTTGAAATCAACGATGATCTTGATATTCTAAAATCAATCGGCATGCTTAAAGGTTTGCACACGGGTGACTGCACCCCAGAAGACTTGGAGAGTATTAAGAGCTTAGTACCACAATCTTTGTGGCCATACGTAGACAATATTGCTTCGGGCAAAGCCAATGAAAACACAGCCAGTTCATCGTTACAAGCCGAGGATTTCGTGGAAGCAACAATAGACGAAGAAAGCTCGCGTCCCTCGTCGAGCTTTGACCCATTGTCACCTAGTGTAGGTGATTATTCCGATGAGGAACTCGAATCAGACATCTCAAGTGAAACGGAACTGAACTAG
- Protein Sequence
- MTQQNTTTNFLIQGHNGQMVKLIQATKPISGIITTSMSGQPVKIFKTGVSSPETSQGTQIIRTLSLPPTKIVTKPVPIHVGNLPKVTTKTIKITPSQIQSFKMLHTTPKLQTVSGPLASTISGSQGTKIMSPHILSRKRMDPLELDYTPETKRARKSEKVGKGLRHFSMKVCEKVKQKGTTTYNEVADELVGEFTRSSSPNTLADQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWIGLPTNSFQECHQLQRKIEEKEKSIKLKQNQLNDLILNQIAFKNLAQRNRETEKAIGPPPINSYIQLPFLVVNTNKKAVINCSISNDKMEYLFQFSDRFEINDDLDILKSIGMLKGLHTGDCTPEDLESIKSLVPQSLWPYVDNIASGKANENTASSSLQAEDFVEATIDEESSRPSSSFDPLSPSVGDYSDEELESDISSETELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -