Pmau000142.1
Basic Information
- Insect
- Paykullia maculata
- Gene Symbol
- -
- Assembly
- GCA_003055125.1
- Location
- NDXZ01092487.1:17011-19008[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00037 2.9 8.5 0.0 26 49 269 292 251 294 0.91 2 4 0.0021 16 6.1 0.1 20 44 436 460 429 465 0.87 3 4 0.018 1.4e+02 3.1 0.1 21 43 465 487 461 492 0.88 4 4 7.4e-05 0.57 10.7 0.1 21 52 493 525 488 527 0.88
Sequence Information
- Coding Sequence
- atgattaaaataaacaataaatgcaGGACTTGTTTAAATGAATCCAGCAAAGGattaaaatctcttaaaaaaatcactACAGATGAGAATAATCAACGAAAATCCTATGCTGAACTCTTAAAGGAAGTGGCCAATataaatATACTGCATGATAAATGTTCGAAACTGCCTCAGGGTATTTGTAGCTGCTGCTCGCAGAAATTAAAAGCAGCTTATGCCTTTGTCCAGAAGGCCCTGGaagtaaatgaaaaactttactCAATGTTTTTACTACAACAATCGGATGATGTCAATAAACCATTGGATTGCTTACAAGAAGTTCAAATTGATATTGAACCATGTAGAGAGATTAAAAGTGAGCATGGAGATGATGTAAGTGACAGCGTAGGGAATGCTGATGGCATGACTGGGTCAGAGTTCCTAAAGAAAAGTATACAGTTGAAAGAAGAAAACACGGAAGATGCCTTAGCTGTAAATTACACCGCGAGGGAACAGAATTTTGAAGAATGTAATGACTTAAAAGATTCTTTAGATGTAACCAACCCTAGTATTTCTCCTACGACAAAAGTTTCTGAAACTGAGGACAATATTCAAgatattttacaacaaactaTGGATACATCCGATGATAATAATAGCATTAATGAAACTTTATTTCCTTTGGCATCAGATGATGATGAGTggcaaaatgatttaaataaattaaataaaaaatcgttcaaaagaaaaacattgccttctaaaaaatcaaagaaatcaCGTGAAAACGTGGATAACAAAAATGAAGACGAATGGTTGCAAGTAAAGTGTAATGAATgtgataaaatatttgataattcaCGTCTATTAAAGCGGCACCTGCGTCTGAATCATGTGCCGGATGAGCTAAAAATTCAGTGTCTTCATTGTGAGGCCAAATTTAGCCGACGCCATAATATGTACGCTCATATGCGTCGCATTCATAAGACGGAAAATTTGCAAGAGTTTCAAATACAACCGAAGAAAACAAATGCCGAAAAACAATATGCATGCCAACAATGTCCTCGATCATATACCAACAAGTATAAATTAATTGCTCATGTAAATAGTCATCATTGTGCCGAAACCAAAGACGCGGCTGCTAAAAAGAAAGTGCTTCAGCCGAAGAAACGGTTTCTGTGCACGCTCTGTGGTCTGAAGTTCGATAGTGagggaaatttaaatatacactTTAGACGACATACCGGTGAAAAACCGTACAAGTGCGAATTTTGTGATAAGGCCTATCCTAGATTGTACGACGTTCAGGTACATCGTCGTACGCATACTGGCGAGAAGCCCTATCAATGTACACTCTGCGAGAAGACATTTAGACGATcgaacaaattaaaagttcacATGAGGACACATACAAACGAACGTCCATACAAGTGTACGCAGTGCGAGAAGGCATTTAAACAatcaaaagatttaaatatacaCAAACGTACGCATACCGGCGAAAGACCCTATAAATGTGATGTCTGTCTGAGTACATTTACGCAAAGTAATTCTTTGCGTTTACATAAAATCAAGCAGCAACATTTTGAAAATCCAAATGCGGCTGATAATTTATCCGAAGGAATACCACATCCACCACCACCGCAACCAACACTGATGTGTCCACCAAcataa
- Protein Sequence
- MIKINNKCRTCLNESSKGLKSLKKITTDENNQRKSYAELLKEVANINILHDKCSKLPQGICSCCSQKLKAAYAFVQKALEVNEKLYSMFLLQQSDDVNKPLDCLQEVQIDIEPCREIKSEHGDDVSDSVGNADGMTGSEFLKKSIQLKEENTEDALAVNYTAREQNFEECNDLKDSLDVTNPSISPTTKVSETEDNIQDILQQTMDTSDDNNSINETLFPLASDDDEWQNDLNKLNKKSFKRKTLPSKKSKKSRENVDNKNEDEWLQVKCNECDKIFDNSRLLKRHLRLNHVPDELKIQCLHCEAKFSRRHNMYAHMRRIHKTENLQEFQIQPKKTNAEKQYACQQCPRSYTNKYKLIAHVNSHHCAETKDAAAKKKVLQPKKRFLCTLCGLKFDSEGNLNIHFRRHTGEKPYKCEFCDKAYPRLYDVQVHRRTHTGEKPYQCTLCEKTFRRSNKLKVHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCDVCLSTFTQSNSLRLHKIKQQHFENPNAADNLSEGIPHPPPPQPTLMCPPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01202134;
- 90% Identity
- iTF_01162439;
- 80% Identity
- iTF_01162439;