Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1e-11 2.3e-08 33.9 0.0 1 38 47 85 47 90 0.89

2 4 3.2e-14 7.4e-11 42.0 0.0 2 39 102 139 101 142 0.94

3 4 3.6e-18 8.4e-15 54.6 0.0 1 45 156 201 156 201 0.98

4 4 1.1e-19 2.6e-16 59.4 0.0 1 43 208 251 208 253 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1e-11	2.3e-08	33.9	1	38	47	85	47	90	0.89
2	4	3.2e-14	7.4e-11	42.0	2	39	102	139	101	142	0.94
3	4	3.6e-18	8.4e-15	54.6	1	45	156	201	156	201	0.98
4	4	1.1e-19	2.6e-16	59.4	1	43	208	251	208	253	0.96

Coding Sequence: atGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAACGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATatgaattcagctttagatGCACTGAAGAATCAAAACATGAGTCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCATCGCATGGGCATTGAAACACCGAAGAAGGAAGGAGGAACCAAGTCGTGGAACGAAGACTCGCTCAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCGAATAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCACCATTTAATGCCGCCCCCACCACTTGGACACCGGAAGATTTGGAACGGGCCTTGGAGGCGATCCGAGCTGGTCATACGTCGGTACAGAAGGCAAGTGCAGAATTTGGTATTCCCACAGGTACATTATACGGTCGTTGTAAACGTGAGGGCATTGAATTATCACGTTCAAATCCTACACCCTGGTCTGAAGATGCTATGAATGAAGCCTTAAACTCTGTGCGCATTGGTCAAATGTCTATAAATCAAGCTGCTATCCATTACAATCTACCGTATAGTTCATTGTATGGCCGCTTTAAACGTGGCAAATATGATGTGGCCAATACAAGTGGCGCTTCCATTAATAATACATCGGGCAATACCTCTGGTAGCATTGAAATTATTGAACACAGTCAAGAGAATTCGAAAGAACAGTTCGTTCTTTATTACTCTTTTAAAGTCTTCTATGGCTTCGGTTTTGAAGCACAGATTTCGCactttttgtcttaa
Protein Sequence: MYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGASINNTSGNTSGSIEIIEHSQENSKEQFVLYYSFKVFYGFGFEAQISHFLS

Sequence clustering based on sequence similarity using MMseqs2