Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 8.1e-12 2.1e-08 33.9 0.0 1 38 49 87 49 92 0.89

2 4 2.6e-14 6.8e-11 41.9 0.1 2 39 104 141 103 144 0.94

3 4 2.9e-18 7.6e-15 54.6 0.0 1 45 158 203 158 203 0.98

4 4 5.2e-21 1.4e-17 63.4 0.0 1 45 210 255 210 255 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	8.1e-12	2.1e-08	33.9	0.0	1	38	49	87	49	92	0.89
2	4	2.6e-14	6.8e-11	41.9	0.1	2	39	104	141	103	144	0.94
3	4	2.9e-18	7.6e-15	54.6	0.0	1	45	158	203	158	203	0.98
4	4	5.2e-21	1.4e-17	63.4	0.0	1	45	210	255	210	255	0.97

Coding Sequence: ATGGATATGTACAACTCCGACACCAGTGAAGATTCAATGATGATCGCCAACGGTTCACCCAACGACAATAATGAGCCACACTACACGAATCTGGACCAACAGCATGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAATATGAGCTTGACGAAAGCATCCGTAACATATGGCATCCCATCGACCACACTATGGCAGCGAGCACATCGCATGGGCATAGAAACGCCGAAGAAGGAAGGCGGCACTAAGTCATGGAATGAGGATTCATTGAACAGTGCATTAGAAGCCTTACGTACGGGACAAATATCTGCGAATAAAGCATCAAAAGCATACGGTATTCCGTCCTCGACACTATATAAAATCGCACGTCGCGAGGGTATCCGTTTGGCGGCACCATTCAATGCGGCGCCCACAACATGGACGCCGGAAGATTTGGAACGTGCATTAGAGGCCATTAGAGCCGGTCACACGTCCGTCCAGAAAGCCAGTGCTGAATTCGGTATACCAACAGGAACACTCTACGGACGCTGCAAGCGCGAGGGTATCGAATTGTCGCGGTCGAATCCGACTCCATGGTCTGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGAGTTGGGCAAATGTCGATAAACCAAGCCGCCATCCACTACAACCTCCCCTACAGCTCGCTCTACGGGCGCTTCAAGCGGGGCAAGTACGATGTCTCCAACACGAGCGGCACCTCCATCAACAACACGTCCGGCAACACATCCGGCAGCATTGAGATAATCGAGCATAGTCAAGAGAACTCCGTGCAGCACTCGACGCCGACCGGGCAGCAGCAGATCCAACAGATCTACCACCACCACAGCACCCCCGAGAGGAGTTGA
Protein Sequence: MDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSINNTSGNTSGSIEIIEHSQENSVQHSTPTGQQQIQQIYHHHSTPERS

Sequence clustering based on sequence similarity using MMseqs2