Prec020541.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720249.1:7183314-7185271[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-06 0.043 15.1 0.0 13 51 208 246 194 248 0.84 2 4 4.2e-05 0.84 10.9 1.3 25 52 248 275 245 277 0.91 3 4 0.0044 89 4.5 0.0 16 46 329 359 325 362 0.85 4 4 8.1e-05 1.6 10.0 0.2 21 48 362 389 358 392 0.90
Sequence Information
- Coding Sequence
- ATGTCCTACGAAGACAAATGTAGAATTTGTCTAAGAGACAACGCTGGATAtcatatatttgaaaacatagaAAGTAAACAGAGCATTCATTCAAAACTCTTTTTATGTCTGAACGAAAAGATTGAAAATATAGAGGGGTATCCTCAGAAGATTTGTGAGTATTGCAGGGACACTCTAGATACTGTGTACAAATTTATCAGACAATACAAAAGCAGCTGCAAACTACTAGAAAGTTATcttcataaaattaaagaagAATGCCATGCAGACAAtcttgaaattaaattagaaaatgAAGATATTGTATTAGAAATATGTAAAAATGAACCATTATCTGATTCTGATGGCTTGGAACCACTTGATGACCTGTGGGAGCCGAAGACACAGAACAAAAAACAAGATAAAGGTCTCTTAGAAGTCACTGCTAAGCTGAAAAGTCTCAAggatattaattttaaaaagaaatcTGTGCAACAAAACAGCAGGAAAACTGGAAATATTGCATCATCTATTTTGGAAGCAGAATTTGATTGGAATGGCGAAAGTTTGAGATCCAGTAAGTCAAAACCACCTAAAGTAGTAAAAGCTAAACCACAAAAGAAAAACACACTATTAGGCCTAACAAATCCAGCGAAACCTAAAAAGAGTCAATCACCAATCTTATGTGATTTATGTGGGGACGTTTTTAAGAATGCAGATAGACTCCGTCTGCACAAAGAGAACAAGCATTTTAATAAAGAAAGCAAATGTCCCCACTGCTCTAAAATTTGCTCATCAGCAATTAATTTAAGGCGGCATATAAAAAGACAACATGGTGAGAAGCCATTTACATGTGATAGTTGTGGTAAAGGCTTTGCTGCCAAGGGAATGATGGCTACTCACATTAGGTATGTTCACTTAAAGAAAAGACCAGAAACAGTGCTATTACCATGTGACAAATGCGACAGaaaattttctaataaaaaagcACGCATCATCCATGACAGATCTGCTCACACAGGATTAAGGCCGGCAGTTTGTAATCTGTGTGAAGCAAGCTTTTACCATGAAGATTACCTGAAGGAACATATGAGATTGCACACTGGAGAGGCACCATTCAAATGTCCCATATGTGACCGAGGATATGCTCAGAGAGGCAATATGAGAAGtcatataaaacataatcaCCGGTTGGCTGATTTGAGCTCAGAACTTCTTAAGACTCTTAAACCTAGATGGTTCAAATATCTTAAGACACCATGA
- Protein Sequence
- MSYEDKCRICLRDNAGYHIFENIESKQSIHSKLFLCLNEKIENIEGYPQKICEYCRDTLDTVYKFIRQYKSSCKLLESYLHKIKEECHADNLEIKLENEDIVLEICKNEPLSDSDGLEPLDDLWEPKTQNKKQDKGLLEVTAKLKSLKDINFKKKSVQQNSRKTGNIASSILEAEFDWNGESLRSSKSKPPKVVKAKPQKKNTLLGLTNPAKPKKSQSPILCDLCGDVFKNADRLRLHKENKHFNKESKCPHCSKICSSAINLRRHIKRQHGEKPFTCDSCGKGFAAKGMMATHIRYVHLKKRPETVLLPCDKCDRKFSNKKARIIHDRSAHTGLRPAVCNLCEASFYHEDYLKEHMRLHTGEAPFKCPICDRGYAQRGNMRSHIKHNHRLADLSSELLKTLKPRWFKYLKTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161791;
- 90% Identity
- iTF_01161791;
- 80% Identity
- iTF_01161791;