Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720263.1:3146145-3155014[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1e-06 0.00011 23.5 4.5 1 23 105 127 105 127 0.98

2 10 0.00013 0.014 17.0 3.8 2 23 133 154 132 154 0.97

3 10 1.2e-08 1.3e-06 29.7 0.3 2 23 159 180 158 180 0.97

4 10 7.9e-06 0.00084 20.8 0.5 1 21 186 206 186 207 0.96

5 10 7.5e-06 0.00079 20.9 1.9 2 23 216 237 215 237 0.95

6 10 1.2e-05 0.0013 20.2 1.0 1 23 243 265 243 265 0.98

7 10 4.5e-05 0.0047 18.4 2.6 1 23 271 293 271 293 0.99

8 10 4.7e-05 0.005 18.3 7.1 1 23 299 321 299 321 0.98

9 10 4.2e-05 0.0045 18.5 2.1 2 23 328 349 327 349 0.97

10 10 0.00036 0.038 15.6 3.4 1 23 355 378 355 378 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1e-06	0.00011	23.5	4.5	1	23	105	127	105	127	0.98
2	10	0.00013	0.014	17.0	3.8	2	23	133	154	132	154	0.97
3	10	1.2e-08	1.3e-06	29.7	0.3	2	23	159	180	158	180	0.97
4	10	7.9e-06	0.00084	20.8	0.5	1	21	186	206	186	207	0.96
5	10	7.5e-06	0.00079	20.9	1.9	2	23	216	237	215	237	0.95
6	10	1.2e-05	0.0013	20.2	1.0	1	23	243	265	243	265	0.98
7	10	4.5e-05	0.0047	18.4	2.6	1	23	271	293	271	293	0.99
8	10	4.7e-05	0.005	18.3	7.1	1	23	299	321	299	321	0.98
9	10	4.2e-05	0.0045	18.5	2.1	2	23	328	349	327	349	0.97
10	10	0.00036	0.038	15.6	3.4	1	23	355	378	355	378	0.95

Sequence Information

Coding Sequence: ATGTCAGAAGTATTGGAAATAGTGAAGGAAGAACGGGCCAGCCCGATTCCAGAAATAAATTTGGAGAATCAAAAAATAAAAGAAGAACCCCATGATACATACACGGAAAACTTGCGGGACTCTGATCAAGCCTGTCCATGCCCATGCTCTCTGAATGACAAGAATAAAACCGCAGATCAGTCGGTGGCAATCAAAGTTGAACCACTAGATgaggcGCCTGAATTTACTGGAACCCTAACTTCTCAAAAcagtgacgatgatgatgatgataGTCCATTAGCGGAACACTTCATGACGTTCACCTCGGGAAGGCACACGTGTAAAATATGCCAGAAATCGTTCGCGAAGCGCCAGAACCTACGAAAACATATCCAAACGCACACGCGAATAAAACTAGAATGCACCCACTGCGATAAGACTTACCATAGCCAAGAACAACTGGACAAGCACCTAGAGACCCACACCAAAGTGATCAAATGCCCCGACTGCGGCAAAGTTTTCTCCCGCAGCAGCAATCTGTGGCAACACAAACAAGTGCACTTGAAGGAGAAACCTTATAACTGCGACACGTGTGAGAAGACATTCTCCATTAAATCCAATCTCCTGAGACATCAACGGGGCAGATGCAAGCCGCCTGCGGACCTTGTGTGCCATGTTTGTGATAAAGAGTTCAAACGGTCATATCTCCTTAAGAGCCATCTAGTGAAGCATGAGACGGAACGCCCCTACACCTGTGATATATGCAAGCTCACTTTCAAATACAAAAGCGCTGTCCAAAGACATCTGCAATGGCACTCCGGGACGAGACCATACAAATGCTCGTACTGCCCGAAGACATTCACACACTCAGGTCTCATCAAACCTCACCTACGGACTCATACAGGGGAGAAACCCTACCAATGCACTATTTGCACCAAAATGTTTACACACAAACATAACATGGAACGGCATAAAATGAACCACAGTAGGATAAAGCAGCTTGTCTGCGATTTGTGCCACAAAAAGTTCCCCAGAGAAAGCCGACTGAGGTACCATATGAAAGTCCATGTCGGTGGGAAATACTTTGACTGTGGAGTGTGTACTAAGCAGTTTACGCACAAGTCCAATGTGTTGAGGCATTATGAGAGGAAGCATCCCGGTAAAACGTGGTCTGGGAAGGAGACAGATGCATCAGTGGCGATGAAGGTCTGGGATGTGGCTAAGGATCTGCTGAAGCCACATTACACACAGCCGGAGGAGATCTTGGGGTCTTTCTTGGATCTTGATATCCATACATCTGAAATACAAGATGCATACAGGGTGAACGTCAAATCAAATGGTAACCCGCCTATTGTAGTGAAATTTACGACAGTGTTTCGGAAAGAAGAATTTATAAAGAAAGCCAAAAAGCTGATGAAAGATAACCCTAACAAACTTGGTACTCAAATTCAAGTGCAAGGATATCATGGAGCTCAGGTTTTCATTGCCGAGCATCTCACCGCAAAGACTAGACGGCTCCTTATGCTTTCGAGGGACTTCGCCAAAACTAACGGATACCAGTTCTGTTGGTGCTCTTACGGAAGAATTTTTCTTAGGAAAAAGGAAGGCACCCCTCAGATACTCATCAAAGATGAGAAACAGCTGGAGGGGCTCAAGGAACCATTACAGTAA
Protein Sequence: MSEVLEIVKEERASPIPEINLENQKIKEEPHDTYTENLRDSDQACPCPCSLNDKNKTADQSVAIKVEPLDEAPEFTGTLTSQNSDDDDDDSPLAEHFMTFTSGRHTCKICQKSFAKRQNLRKHIQTHTRIKLECTHCDKTYHSQEQLDKHLETHTKVIKCPDCGKVFSRSSNLWQHKQVHLKEKPYNCDTCEKTFSIKSNLLRHQRGRCKPPADLVCHVCDKEFKRSYLLKSHLVKHETERPYTCDICKLTFKYKSAVQRHLQWHSGTRPYKCSYCPKTFTHSGLIKPHLRTHTGEKPYQCTICTKMFTHKHNMERHKMNHSRIKQLVCDLCHKKFPRESRLRYHMKVHVGGKYFDCGVCTKQFTHKSNVLRHYERKHPGKTWSGKETDASVAMKVWDVAKDLLKPHYTQPEEILGSFLDLDIHTSEIQDAYRVNVKSNGNPPIVVKFTTVFRKEEFIKKAKKLMKDNPNKLGTQIQVQGYHGAQVFIAEHLTAKTRRLLMLSRDFAKTNGYQFCWCSYGRIFLRKKEGTPQILIKDEKQLEGLKEPLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01161563;
90% Identity: iTF_01161563;
80% Identity: iTF_01161563;