Prec035283.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720263.1:3146145-3155014[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00089 1.8 9.8 2.6 6 41 96 126 91 129 0.86 2 10 0.027 54 5.1 3.5 6 34 123 146 122 155 0.72 3 10 2.2e-05 0.045 14.9 0.2 12 38 153 176 147 178 0.85 4 10 6.7e-05 0.14 13.4 2.5 1 43 171 209 171 210 0.89 5 10 0.046 93 4.3 0.7 18 40 216 235 214 241 0.78 6 10 0.19 3.8e+02 2.3 1.2 10 39 237 262 229 269 0.73 7 10 0.08 1.6e+02 3.5 1.1 18 31 272 285 261 294 0.80 8 10 1.7 3.4e+03 -0.7 4.9 16 38 298 317 289 322 0.80 9 10 0.0036 7.2 7.8 1.5 17 40 327 347 316 349 0.87 10 10 0.0016 3.3 8.9 0.4 18 44 356 379 352 379 0.94
Sequence Information
- Coding Sequence
- ATGTCAGAAGTATTGGAAATAGTGAAGGAAGAACGGGCCAGCCCGATTCCAGAAATAAATTTGGAGAATCAAAAAATAAAAGAAGAACCCCATGATACATACACGGAAAACTTGCGGGACTCTGATCAAGCCTGTCCATGCCCATGCTCTCTGAATGACAAGAATAAAACCGCAGATCAGTCGGTGGCAATCAAAGTTGAACCACTAGATgaggcGCCTGAATTTACTGGAACCCTAACTTCTCAAAAcagtgacgatgatgatgatgataGTCCATTAGCGGAACACTTCATGACGTTCACCTCGGGAAGGCACACGTGTAAAATATGCCAGAAATCGTTCGCGAAGCGCCAGAACCTACGAAAACATATCCAAACGCACACGCGAATAAAACTAGAATGCACCCACTGCGATAAGACTTACCATAGCCAAGAACAACTGGACAAGCACCTAGAGACCCACACCAAAGTGATCAAATGCCCCGACTGCGGCAAAGTTTTCTCCCGCAGCAGCAATCTGTGGCAACACAAACAAGTGCACTTGAAGGAGAAACCTTATAACTGCGACACGTGTGAGAAGACATTCTCCATTAAATCCAATCTCCTGAGACATCAACGGGGCAGATGCAAGCCGCCTGCGGACCTTGTGTGCCATGTTTGTGATAAAGAGTTCAAACGGTCATATCTCCTTAAGAGCCATCTAGTGAAGCATGAGACGGAACGCCCCTACACCTGTGATATATGCAAGCTCACTTTCAAATACAAAAGCGCTGTCCAAAGACATCTGCAATGGCACTCCGGGACGAGACCATACAAATGCTCGTACTGCCCGAAGACATTCACACACTCAGGTCTCATCAAACCTCACCTACGGACTCATACAGGGGAGAAACCCTACCAATGCACTATTTGCACCAAAATGTTTACACACAAACATAACATGGAACGGCATAAAATGAACCACAGTAGGATAAAGCAGCTTGTCTGCGATTTGTGCCACAAAAAGTTCCCCAGAGAAAGCCGACTGAGGTACCATATGAAAGTCCATGTCGGTGGGAAATACTTTGACTGTGGAGTGTGTACTAAGCAGTTTACGCACAAGTCCAATGTGTTGAGGCATTATGAGAGGAAGCATCCCGGTAAAACGTGGTCTGGGAAGGAGACAGATGCATCAGTGGCGATGAAGGTCTGGGATGTGGCTAAGGATCTGCTGAAGCCACATTACACACAGCCGGAGGAGATCTTGGGGTCTTTCTTGGATCTTGATATCCATACATCTGAAATACAAGATGCATACAGGGTGAACGTCAAATCAAATGGTAACCCGCCTATTGTAGTGAAATTTACGACAGTGTTTCGGAAAGAAGAATTTATAAAGAAAGCCAAAAAGCTGATGAAAGATAACCCTAACAAACTTGGTACTCAAATTCAAGTGCAAGGATATCATGGAGCTCAGGTTTTCATTGCCGAGCATCTCACCGCAAAGACTAGACGGCTCCTTATGCTTTCGAGGGACTTCGCCAAAACTAACGGATACCAGTTCTGTTGGTGCTCTTACGGAAGAATTTTTCTTAGGAAAAAGGAAGGCACCCCTCAGATACTCATCAAAGATGAGAAACAGCTGGAGGGGCTCAAGGAACCATTACAGTAA
- Protein Sequence
- MSEVLEIVKEERASPIPEINLENQKIKEEPHDTYTENLRDSDQACPCPCSLNDKNKTADQSVAIKVEPLDEAPEFTGTLTSQNSDDDDDDSPLAEHFMTFTSGRHTCKICQKSFAKRQNLRKHIQTHTRIKLECTHCDKTYHSQEQLDKHLETHTKVIKCPDCGKVFSRSSNLWQHKQVHLKEKPYNCDTCEKTFSIKSNLLRHQRGRCKPPADLVCHVCDKEFKRSYLLKSHLVKHETERPYTCDICKLTFKYKSAVQRHLQWHSGTRPYKCSYCPKTFTHSGLIKPHLRTHTGEKPYQCTICTKMFTHKHNMERHKMNHSRIKQLVCDLCHKKFPRESRLRYHMKVHVGGKYFDCGVCTKQFTHKSNVLRHYERKHPGKTWSGKETDASVAMKVWDVAKDLLKPHYTQPEEILGSFLDLDIHTSEIQDAYRVNVKSNGNPPIVVKFTTVFRKEEFIKKAKKLMKDNPNKLGTQIQVQGYHGAQVFIAEHLTAKTRRLLMLSRDFAKTNGYQFCWCSYGRIFLRKKEGTPQILIKDEKQLEGLKEPLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161592;
- 90% Identity
- iTF_01161592;
- 80% Identity
- iTF_01161592;