Prec010900.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720241.1:15761544-15765815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0034 0.36 12.5 1.6 3 23 56 77 55 77 0.96 2 24 2.8 2.9e+02 3.3 1.1 3 23 441 463 439 463 0.85 3 24 0.14 15 7.4 0.3 1 21 468 488 468 489 0.96 4 24 5.1 5.4e+02 2.5 0.3 1 23 529 552 529 552 0.90 5 24 0.00078 0.083 14.5 0.7 3 21 563 581 563 582 0.96 6 24 0.97 1e+02 4.8 0.4 2 23 590 612 589 612 0.92 7 24 0.02 2.1 10.1 1.3 3 23 631 652 629 652 0.92 8 24 0.00039 0.041 15.5 1.1 1 23 657 680 657 680 0.94 9 24 0.063 6.7 8.5 0.0 1 23 706 729 706 729 0.91 10 24 0.015 1.6 10.5 3.4 1 23 734 756 734 756 0.97 11 24 0.012 1.3 10.8 0.2 1 23 762 785 762 785 0.95 12 24 0.026 2.7 9.7 1.4 1 23 798 820 798 820 0.97 13 24 0.00014 0.015 16.9 1.8 1 23 872 895 872 895 0.97 14 24 0.026 2.7 9.7 2.5 1 22 946 967 946 969 0.88 15 24 0.0016 0.17 13.5 1.5 2 23 995 1017 994 1017 0.95 16 24 0.016 1.7 10.4 0.1 2 23 1023 1045 1022 1045 0.94 17 24 0.04 4.2 9.1 0.2 1 21 1088 1108 1088 1109 0.94 18 24 0.00036 0.039 15.6 0.6 1 23 1119 1141 1119 1141 0.94 19 24 8.6e-05 0.0091 17.5 0.4 2 23 1228 1250 1227 1250 0.93 20 24 2.6e-07 2.8e-05 25.4 1.4 3 23 1257 1277 1256 1277 0.98 21 24 0.0042 0.44 12.2 0.4 1 23 1297 1319 1297 1320 0.95 22 24 0.26 27 6.6 0.0 1 23 1341 1363 1341 1363 0.97 23 24 0.022 2.3 10.0 0.6 1 23 1369 1392 1369 1392 0.95 24 24 0.0003 0.032 15.8 0.5 1 23 1400 1423 1400 1423 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGTGAGAAAGACGAGGAAGAAGAGTATGATGAAGAAGAAGTAAAAACCCCACAACCAGTGAAGGTTCCCCATATGCCTGAAGTGTCCATCACCGTGATGCGGCCTACTGGAGAGACACTACAATCGCGCCAAGGTATCCAACAAATTGCCTCTAAAGACTGTCTTATCTGCGGCCGCAGTTACAGATACTCGCACAATGCGAGACGGCATGAACTCACCACACACAAATTCGATCGGTACACCAACAAAATCAACAAACCGAAAATACATTCTCGTATGCAACCGAAACTTAGGCCTAACCCGTTCAATCCGAAAGCGCGTCTCATGCCCAATCCTATAAGCCACAAAATGCATTTGTTACCTAAAATATCGCCCAAATTAATGCCGCAAATAAATTCTCAACTCCATAAGAAAATAATTACCCCATCAAAACCAATACCCATTAAATCAGCTAAGGCGCCTCAGAACAATTTGCCTTATCCGTTGCGAATCAAAGCGCTCAAAGATTTGCAGATTAAGAAAAAAGAACCACAGATTTTGAAAACACTACTGACATCAAAGCCTGAAGTTTTGGTCTCCGAACCGGAGATAATGAATTCTGGGCCAGAGAGTCCAGAAACACTGATCTCCGAACCTGAAATTGCGTCGTTCCAAGTGGAAACTATCCTCTCGGAGCCAAATGAGTATGATGAACAACAAGATGAACATGGAGATGCGGAGATGCATAACAGCCCTGGTCCAAATTATGACACTGTCGATATGGATTctgaaaatgaaattgaaattgcACGTCAACAAGAAAATGTGCTAGAGAACGAAGTAAATCATAACGAAAACGAAAATAGTCATCAAGATGACGAAAATAATTTGGAGGAGGCTGACAAAGGAGAAGAAAATGATAGTGAGAAAGACCTTAGTCCACAAGCTACAGCTCAAGCCGAAGAAGACAATGGAAATATGGAAATTGATGACAACGAAGGTGCCAGAGAAGATGAACATAACAatgaagatgaagaagaagGGAACGATGATGTTGAAAATGATGAACTAGACGCCAGTCAGGGAGTTGATGAAAACGAGGAAGATGAAGAAATTCTTGGACTTACGCCACATATAGAATTGAACGAAGAGTTACATCATGACACATTCAACAGCGAGGTGAACGATGAAGATGAACTTGACGATGGAGAGCCCAACGACACAGCTAACGGCGAAGAAGATCACGGCACAAACGACGACAGAGGCGTCACCACCGCTCAGAGAGACTTTATCAAAAGGTATCGCGACATCATCCTACAGATCAATACAATGAGATGCCTGTGTTGCGACAAAGAATATCCGCGGAGAAAAGCTGTTATACAGCATCTACAGAAAAACGGGCATAAAGTCCCAAAACATACCTGCTACAATTGCGTCGTTACTTTCCCACACATTGGTGCTTTGCTTAGTCACATGAGACAGGCTAGCTGCACTGATCTTTGGAAGATTATTTACGATGAGAACGGAGTCACGAGCGATATGATTGTTGAGGAGCCCAAAGGCAGAATACAAGCCAAGGATATTTTCAATGCTAAATCATATGCGTGCAGATTGTGTCCCGCCAAATTTCAACTGAAACAATCTATCATGAAGCATGTTTCAGAGTCCCACGAAGATGGTCAGTCATCTGTTCCTATGGGCTGCGTCCACTGTGGAGCCAGCTACAAAGACAAAACTCTACTTAAGAAACATATTCGCAATGGTGACTGTACTGTGTATATCCATTGTGACTTATGTTCAGAACAATTCACCAATATGCTAGAATTTAACGAACACGCTTTGTCCGCTCATGCTGAGCACTTTGTCAAAAATGAAAACCAAACTGTTGATGGACGACTCACAGACTGCTATCTTTGTGGAACTAAGACTAGTAGCTATTCGAACCTTCTCAAACATTTCAAGGCATTTCACGATGAAATACCCCATCAATGTCAATTTTGTGATGTGAAATTTGAGCAACCGGTCGATTTAAACAAGCACATGTACCTGGAGCATCCTGGTCAGACCCCCGACATGCAGGGTACGGAACCGGACATGTCCCTCGTCAAAGAAGAAGCCGAAGAATACCACTATTCGTGCACTGAGTGTAATGCTATATTCGAAACTGTTGACGAATGGACAGACCATCAAGTAGCTGAACATAACCAAGTGGCGCATCATTGCGACCAATGCGAGAAGAAATTCCTGCGGCCTTCGGAGCTAGCAGAGCACAAGAATACACACTTGAGAGTTAAATTCTACCCATGCAGTGTTTGTTCAAACTCCTACAGCACCCCACAAAAGTTGTCCGAACACGTGCAGAACGCTCACCCCGGTGGGGGAACCAAGACCAACCCAGATTTCGAGTTTTTCTGCGAAAGGTGTATTCGGCCATTCAAAAGTCGTCAGGCCTACTCGAATCATATGCGCATTCATTCTAAAGTACCGACTACTAACAGAAAACCCGGTGCACCTAAAGAATTTGACCCACGTATTATTGGGAAACCCATCAAACAGTTCTCTGTGTCCAATGCCGTTCATCCtggtataattaattttaagccAAACGCAAATGTCCCTAATGCTCCTTACTCATGTGATATCTGCGGCAAAGGATTCATGCATAAAAAGAATATATGGAAACATAAGAAAGTGTTACATGCCGATATACTTAACGATAGAAACGATAGCGAAGAGAACACGATGCATGCTTCCACCGAAGAAGACGAATATAACGTTGATGAAAATGGAGTTATGCTTTCGACGCCGCAATTTAACAGTTTTGCTTTTCCAGTAGAACCTTTGCCTCCCTACGAATGTGAATATTGTGGTAAACAATTTCCGCTTAGGACTAGTATGTTGAAGCATTGCCGCGCTAAGCACGGAATTGTTAGTACAAATCATACTAATAGCACTGAGGCACAGGGAACCCCCCCCAATGAAGGTGGTGGTCGATCCAGTTGCACAATTTGTAAGATTACATTTGCGGACAAAAAATCGTACTATCGTCACAGAAAGAACGTGCATAAATCAGCAACGCAAATGTGCAAGATATGTGGTAAGCCTCTGAATTCCACCCAAGAACTGTACGAGCATCTGAAAGCGGCCCACGCTAGTTTATTGCTTGGGTACGATGCCAATCAGAGTACGAGTAAAACTCAGGATATTTCACAAGATATCGATGGCGAATATGAAGAACAAGATTCTGCAAATCCCAACATAGAATACCAGGCCAGGTACCCGTGTGATGCTTGTGGCAAGCAGtttgtaggactgctgtccttgCAAAATCATCAGTGTGTAAGTCAGCCACCTTCACAACCGCAGACTTTTGAGTGTGAAATTTGCCACAAAAGCTACACGTCCATCGCCGCACTGAAGAGTCATCGCGGGTGGCATCTTCGATCCCCCGATGGGAAAGCGGCTGCTAACAATAGCGGTCTTTGGATGCCTCAGCACAAAGTAACCAGTAAGGTTAGCAAACATGAGGTTTTAGAAACCACTCCACCAGTTGTAGCACGAACTCAATCTACGGCTTCCGTGGCGAAGAGAAGATTACCACCAGAAGTGGAGGTGACTGTTGTGaatccaaacaaaaaaatgcGTTCCGATGATTCTGTCGAGATGGATCAGCAAATTGAAAATGTAGATGGGAAATACTGTACAATATGTGACAAAGAGTTTACTAAACGCGCTGCCTATCAACGTCACATGGACGAGGTTCACCAGCCCAACTCCGTGTTTTGTCCGGTCTGTGATAAGAGCTTTACGCGGAAATCCACTTTGCTCGTGCACATGAAAAAACACTATGAAGCTGGCGGAGAAGGTACGTCCTCAGCAGCTCAAGTAGATGAAGACGAAGGCTTTTCATGTGACCTCTGTGGTGCGCAGTACGATACAGAAAACGCTTTGAGGGCGCACAGGATAAGGCATCATGGCGAGGAGTCTGGTGATTCGGAGGATGACGGTGAAGTGCGTATGCCGCAGCCCGGCGAGTTCACTTGCGGACAATGCGGCGACGGGGTGGCCACTGCGCGTGATCTGATCACACATCGAGCTGTGCATTCAACGCCTACTAAATTCTTTTGTAACATTTGCAAAGTGTACTTCGCCAGAGCATTGGACTTGTCGTCACACACGCGAGCGCGACACGCAGACAATGAGAAAGTTTTCTTCCCGTGTGCCATGTGTGATCGCTTCTATATGAACAAGAAAAGTTTACAGCGTCATATCGATATGGTTCATTGA
- Protein Sequence
- MESEKDEEEEYDEEEVKTPQPVKVPHMPEVSITVMRPTGETLQSRQGIQQIASKDCLICGRSYRYSHNARRHELTTHKFDRYTNKINKPKIHSRMQPKLRPNPFNPKARLMPNPISHKMHLLPKISPKLMPQINSQLHKKIITPSKPIPIKSAKAPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETILSEPNEYDEQQDEHGDAEMHNSPGPNYDTVDMDSENEIEIARQQENVLENEVNHNENENSHQDDENNLEEADKGEENDSEKDLSPQATAQAEEDNGNMEIDDNEGAREDEHNNEDEEEGNDDVENDELDASQGVDENEEDEEILGLTPHIELNEELHHDTFNSEVNDEDELDDGEPNDTANGEEDHGTNDDRGVTTAQRDFIKRYRDIILQINTMRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFPHIGALLSHMRQASCTDLWKIIYDENGVTSDMIVEEPKGRIQAKDIFNAKSYACRLCPAKFQLKQSIMKHVSESHEDGQSSVPMGCVHCGASYKDKTLLKKHIRNGDCTVYIHCDLCSEQFTNMLEFNEHALSAHAEHFVKNENQTVDGRLTDCYLCGTKTSSYSNLLKHFKAFHDEIPHQCQFCDVKFEQPVDLNKHMYLEHPGQTPDMQGTEPDMSLVKEEAEEYHYSCTECNAIFETVDEWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQNAHPGGGTKTNPDFEFFCERCIRPFKSRQAYSNHMRIHSKVPTTNRKPGAPKEFDPRIIGKPIKQFSVSNAVHPGIINFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMHASTEEDEYNVDENGVMLSTPQFNSFAFPVEPLPPYECEYCGKQFPLRTSMLKHCRAKHGIVSTNHTNSTEAQGTPPNEGGGRSSCTICKITFADKKSYYRHRKNVHKSATQMCKICGKPLNSTQELYEHLKAAHASLLLGYDANQSTSKTQDISQDIDGEYEEQDSANPNIEYQARYPCDACGKQFVGLLSLQNHQCVSQPPSQPQTFECEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVLETTPPVVARTQSTASVAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQIENVDGKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEAGGEGTSSAAQVDEDEGFSCDLCGAQYDTENALRAHRIRHHGEESGDSEDDGEVRMPQPGEFTCGQCGDGVATARDLITHRAVHSTPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696657;
- 90% Identity
- -
- 80% Identity
- -