Prec023153.5


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pasiphila rectangulata
Gene Symbol
-
Assembly
GCA_963082625.1
Location
OY720251.1:9017903-9034598[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.012 17.1 0.1 3 23 146 166 145 166 0.97
2 19 1.1e-06 0.00011 23.5 1.2 1 23 172 194 172 194 0.99
3 19 6.5e-06 0.00069 21.0 2.7 1 23 200 222 200 222 0.99
4 19 4.3e-06 0.00046 21.6 2.6 1 23 237 259 237 259 0.98
5 19 9.7e-05 0.01 17.4 0.6 1 23 274 296 274 296 0.98
6 19 6e-05 0.0063 18.0 3.1 1 23 311 333 311 333 0.98
7 19 4.2e-07 4.4e-05 24.8 1.5 1 23 348 370 348 370 0.99
8 19 0.00019 0.02 16.5 2.8 1 23 376 398 376 398 0.98
9 19 0.00059 0.063 14.9 0.1 1 23 405 427 405 427 0.97
10 19 1.3e-05 0.0014 20.1 2.1 1 23 433 455 433 455 0.99
11 19 0.042 4.5 9.1 1.8 1 23 462 484 462 484 0.98
12 19 7.1e-07 7.5e-05 24.1 2.3 1 23 490 512 490 512 0.99
13 19 0.049 5.2 8.9 1.8 1 23 519 541 519 541 0.98
14 19 2.9e-06 0.00031 22.2 1.5 1 23 547 569 547 569 0.99
15 19 0.00055 0.058 15.0 0.7 1 23 576 598 576 598 0.99
16 19 2.2e-06 0.00024 22.5 1.8 1 23 604 626 604 626 0.98
17 19 0.0023 0.25 13.0 0.3 1 20 632 651 632 654 0.93
18 19 4.5e-05 0.0048 18.4 1.4 2 23 661 682 660 682 0.96
19 19 4.1e-06 0.00044 21.7 1.4 1 23 688 711 688 711 0.97

Sequence Information

Coding Sequence
ATGGCACGGGGCGTGGGGGTCCCCGTGCCACCCCCCGGCGACCTACTCGCCACTATATCCATGTTTGAACAGCAAATCAAGGCTGAACCCATGAACTTCTACCACCCTCATGTTACCCACGTACATCCCGGTCCCCCCACGATAGGGCGTTCAGAGGCTCATCACCTCATGAATCCCCATCACCACCAAGAAGACTCAAAAGACAGCCTGATAATACAACATCAAGTACAACACCAGCAAGATCTCATGGAACAACATCAGCAAGACATGCAACAAGATGATGAGTTGAGCTTTAAAGGAATGGATGATGAAGGAGTTGATATGGATATGGATGGAAGACAGTGTTCACAGGGCATGGGCGTGGATATGGGCCCAGTTCAAACAAAAATGGAGGTAAATGGAGGTCAAGCCACACCAAGATCCAAACCACAGGCCTGTAAGGTGTGTGGCAAAGTGCTGTCGTCTGCCTCATCATATTACGTCCACATGAAGCTTCATTCAGGAAACAAGCCCTTCCAATGCACAGTGTGCGACGCAGCTTTCTGCCGGAAGCCATATCTAGAAGTCCATATGCGCACTCACACTGGGGAACGGCCGTTCCAATGCGATCTGTGCCTAAAACGCTTCACACAGAAGTCGAGCTTGAATACGCACAAACGTGTGCACACGGATGAGCACTTGCACGCGCTGGTGGCGAAGGACCGGCCCTACAAGTGCGAACTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAACACAGGCGGACTCTGCTGGTCAAGGAACGGCCCTACCAATGCGGAATCTGCTATGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGGAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGACGCCATGGGAAAATACACACTGAGGAGCACATGCAATCGCTGATCAACAAAGTGCGTCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACACAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACACTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACGCACACCGGAGAGCGCCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCGTTCCAATGCCTGCAGTGCCCGGCCGCCTTCACTTGCaaacagtacttggagattcacaACCGCACGCACACGGGAGAACGCCCCTACCAATGCGATGTGTGCCTCAAGAGATTCGCTCAAAAGTCTACACTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCGGCTGCCTTTACATGCAAGCCGTACCTGGAGATTCACATGCGTACCCACACCGGCGAGCGTCCTTACGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACGCTGAACATCCACAAGAGAATACACACCGGTGAACGCCCATATGCTTGCGATATATGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCACATAGATGGTCTCACGTCGCCGACAAGCCCCTGAACTGTGACCGCTGCTCGATGACGTTCACTTCCAAGTCCCAGTTCGCGCTCCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAATGCAGCGTCTGCGGCCGTACTTTCGTCAGGGACAGCTACCTGATACGCCACCACAACCGCGTTCACCGCAACAACCACAGCAACCTATCTGCTAACAGCATTGGGAACTTGAATAGCGTCGCCACCAACACGTCTAACAACGGGGGCTTCGACTCACCGGGCGTTTGCGACTTAAGCTTTGTTCCGATGGTGAACCGTTACATGACGTCACAAGGCACTCAGGTTTCGATGCAAGACGCTCAAAAGATGTCGGCTATGTCGCCCCAATCCATCGCATCTATCTCTTCGCCCCCGCCACCGCATACGCCGACGCCCCAACCCCAGATGTCAGGCCCGCTGCACATGGTAGATTGA
Protein Sequence
MARGVGVPVPPPGDLLATISMFEQQIKAEPMNFYHPHVTHVHPGPPTIGRSEAHHLMNPHHHQEDSKDSLIIQHQVQHQQDLMEQHQQDMQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGPVQTKMEVNGGQATPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRTLLVKERPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHMQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDTHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPYECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRNNHSNLSANSIGNLNSVATNTSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDAQKMSAMSPQSIASISSPPPPHTPTPQPQMSGPLHMVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_00377295;
80% Identity
-