Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720262.1:2337534-2344334[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.00018 0.019 16.5 1.8 1 23 136 159 136 159 0.96

2 24 2.8e-05 0.003 19.0 6.6 1 23 162 184 162 184 0.98

3 24 1.4e-05 0.0015 20.0 1.0 1 23 207 230 207 230 0.94

4 24 6.5e-08 6.9e-06 27.3 0.8 1 23 236 259 236 259 0.97

5 24 6.4e-05 0.0068 17.9 0.3 1 23 283 306 283 306 0.94

6 24 2.4e-07 2.5e-05 25.6 1.8 1 23 312 335 312 335 0.97

7 24 0.00053 0.056 15.0 0.1 1 23 341 363 341 363 0.98

8 24 0.00096 0.1 14.2 0.6 3 23 371 391 371 392 0.95

9 24 0.00065 0.068 14.8 0.9 1 23 414 437 414 437 0.95

10 24 1.6e-07 1.7e-05 26.1 1.2 1 23 443 466 443 466 0.97

11 24 0.00011 0.011 17.2 0.7 3 23 474 494 472 495 0.94

12 24 0.0014 0.15 13.7 1.2 1 23 512 535 512 535 0.95

13 24 2.5e-06 0.00027 22.3 1.7 1 23 541 564 541 564 0.97

14 24 4.1e-06 0.00043 21.7 4.5 1 23 569 591 569 591 0.98

15 24 2.7e-07 2.9e-05 25.4 1.3 1 23 597 619 597 619 0.97

16 24 0.00042 0.045 15.3 2.2 1 23 624 646 624 646 0.98

17 24 0.019 2 10.1 2.7 2 23 654 675 653 676 0.91

18 24 0.001 0.11 14.1 1.0 1 23 682 705 682 705 0.95

19 24 9.5e-06 0.001 20.5 1.6 2 23 710 731 709 731 0.96

20 24 0.059 6.2 8.6 0.6 1 23 737 759 737 759 0.92

21 24 9.9e-06 0.001 20.5 4.4 1 23 765 787 765 787 0.97

22 24 2.2e-05 0.0023 19.4 2.3 1 23 793 816 793 816 0.94

23 24 0.00074 0.078 14.6 4.1 1 23 822 844 822 844 0.98

24 24 0.0003 0.032 15.8 2.0 1 23 850 873 850 873 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.00018	0.019	16.5	1.8	1	23	136	159	136	159	0.96
2	24	2.8e-05	0.003	19.0	6.6	1	23	162	184	162	184	0.98
3	24	1.4e-05	0.0015	20.0	1.0	1	23	207	230	207	230	0.94
4	24	6.5e-08	6.9e-06	27.3	0.8	1	23	236	259	236	259	0.97
5	24	6.4e-05	0.0068	17.9	0.3	1	23	283	306	283	306	0.94
6	24	2.4e-07	2.5e-05	25.6	1.8	1	23	312	335	312	335	0.97
7	24	0.00053	0.056	15.0	0.1	1	23	341	363	341	363	0.98
8	24	0.00096	0.1	14.2	0.6	3	23	371	391	371	392	0.95
9	24	0.00065	0.068	14.8	0.9	1	23	414	437	414	437	0.95
10	24	1.6e-07	1.7e-05	26.1	1.2	1	23	443	466	443	466	0.97
11	24	0.00011	0.011	17.2	0.7	3	23	474	494	472	495	0.94
12	24	0.0014	0.15	13.7	1.2	1	23	512	535	512	535	0.95
13	24	2.5e-06	0.00027	22.3	1.7	1	23	541	564	541	564	0.97
14	24	4.1e-06	0.00043	21.7	4.5	1	23	569	591	569	591	0.98
15	24	2.7e-07	2.9e-05	25.4	1.3	1	23	597	619	597	619	0.97
16	24	0.00042	0.045	15.3	2.2	1	23	624	646	624	646	0.98
17	24	0.019	2	10.1	2.7	2	23	654	675	653	676	0.91
18	24	0.001	0.11	14.1	1.0	1	23	682	705	682	705	0.95
19	24	9.5e-06	0.001	20.5	1.6	2	23	710	731	709	731	0.96
20	24	0.059	6.2	8.6	0.6	1	23	737	759	737	759	0.92
21	24	9.9e-06	0.001	20.5	4.4	1	23	765	787	765	787	0.97
22	24	2.2e-05	0.0023	19.4	2.3	1	23	793	816	793	816	0.94
23	24	0.00074	0.078	14.6	4.1	1	23	822	844	822	844	0.98
24	24	0.0003	0.032	15.8	2.0	1	23	850	873	850	873	0.96

Sequence Information

Coding Sequence: ATGGTGGAACTGCTTACCCCACAGGAACTGCTCATTGGAGATGGCTGGTCGGACACTCTTTGCTTCCTCTGTAACGCGCTGGTGAAGAAATTCTGCAAGTTCTTCGAGCTTGCGCACAGATCTGAGAGGAACTTTAACAGTTTGCTTAATGGCAGTGTGCAGCTGGCAGGTCCGATCCTCGCAGCGACTGCGCCCAGCTTCCACAACCTGTCGATATCCGCAGTCAAGCATACATCCTCTCTGGACTTGAAAGAGGAAGATGTGCCGGTGAAAGTGGAGCTGATTGAGGAGAAGAAGtttgacgatgatgatgatgatgATATTCCCCTCGACAACGACTCAGAATCCGACCCACTGGAAGCTCTGTCGGTGAAAGCAGAGACCCTAGAACGGAAACACACTATCCATCCGTGCGAGGAATGCCCGCGTCGCTTCAACACAACAAATGACCTGAACAAACATAAAACAACCGTTCACAAACACCACAGATGCGACCAATGCGGAGAAACGTTCCGCAAACAGTCCCACTTAAAAATGCACACGAGATATCACAATGAAGAAATCTGCGAAACGAAAATCGGTAAACTGCGCAGTCTGATCGCGACAACAGGGTCGAAATTCGCCTGCGTGCTTTGTAGTAAGACGTTCAGCCAGAAGGGGCATTTGAAAACCCATATAATGGCCATAcacactggagaaaagccaTATGCATGCACCGAGTGCGACAAGAGATTTGTGCAGCGCAGTAACTTGTCGGCGCATATGAGATCACGGCACGAGAAGCCGTTTAAAAATGACTGGCATATGAGTGGAGAAAACGGGGAAGACCAGGTTGACGGGAAGCCTTTCTCCTGCGGGATTTGCAGTAAGACCTTTGCCATGAAGTCTTATTTACAGTCTCATGTTATGGCGATGCATACTGGCGAACGCCCATTCCCTTGTACTTTGTGCGATCGAAAATATACCCAGAAAAGTCATCTTCGAGCGCATATGAGAATCGCTCACGCGGTGGAGAAGCCCTTTGAATGTGACAGCTGTGAACTAAGGTTCGACGATGCAGAAGAACTCCGTAAACACGCGAAAATACACGCGGACGACAAACCTCTAGGGTGTGTGACTTGTGGCAAAGTGTTTCAAGCTGAAAGCGatctaaaaaaacatataattctCCACCACGGAGAAGCTTCGCTACTGTGTGATCGTAGTGAGATAATAAGTGATAATGTAGGCAAGAAAAGGTTCCCTTGTGATCAGTGTAGTAAGACTTTTGGCTGGAAATCTCATTTAAAAACTCATATAATGGCCATCCACACTGGAGAAAGGCCATTTAACTGTAACATGTGTGATAAGAAATTCGTACAGAGAAGTTCTTTGAGAGTTCATATGAGATCTGCACATTCGGAACAAAAACCCCTGGCTTGTGATATGTGTAACAAAGTTTTCCAAGCGGAGACGAACTTAAAGAAACATATGATTATTCACCACGGAGAAACAGAAAATAGAGACGAAAATCATTCAAAAACTGACAAACGTTTCACATGCGCTACGTGTTCTAAGTCATTTGGCTGGAAATCTCATTTAAAAACCCATATAATGGCGATTCATACCGGAGAAAGACCGTTTTCTTGCTCAGTTTGTGATAAAAAATTCGTTCAGAAAAGTTATTTACGAGCTCATAAGTTGACAAGCCACTCAGGATTGACATTTACCTGTGAGAAATGCAACAAGCGATGCACCTCAGCCAGCAACCTTCGCATCCATATGAGATTTCACACCGGAGAAAAGCCATATGCCTGCAGTAAATGCAACAAATCATTCAAACGGAACGACAGTCTCAAAATCCATATGGCTTCGCATCGCGGCGAACAATTCACATGCAAAGTCTGCGCGGTAAGGTTCAACTCTAAAACTACCTATCAAACCCATATGAGATTACACACGAGTCATCTACCACCGTTCCTTTGTCTCAGGTGCGACGAAAAGTTCAATACCAAAACTGATTTAGAAATACACAATACTAAACACCACGCGGCTGATATGCCATTCTCGTGTGATTATTGCGAGTTGAGATTTGACGACAAGAACGTGCTGAAGAAACATCAGCTCCTGCAACACGAGGAAAAGTTGACGTGCGATATTTGTAACAAGTCTTTTCACGCCAAAAGCGCATTACGGCGACACATGTCCATACACAGCACAGAGAAGCCATTCGCGTGTATCATCTGCAACAAGTTCTACAAGCAGGAACGGATATTGAAGAAACACATGGAAATTCACACGGAGGAAAAACAGTTTGCCTGCGACAGGTGCGACAAGAAATTCTACCAGAAATGCAATCTGACAAGCCATATGAGAATTCACTCTGGAGAAAAGCCATATGTCTGCGACCGCTGCGGGAATAGCTTTAACCAGAAAAGTCATTTGAGAACTCATATACTGTTTATGCATACATCGGATAGGCCATATTCTTGCGATGTTTGCAGCAAGCAGTTTAGGTTAAAGAGTTGCCTGAGAAATCATAAGATGGTTCACACAGGAGAGAGGCCATATCCCTGTACTATGTGCGAAAAAAAGTATTATAAGAAGAGTGAATTGAAATCCCATGTTACTAAAATGCATTCCtaa
Protein Sequence: MVELLTPQELLIGDGWSDTLCFLCNALVKKFCKFFELAHRSERNFNSLLNGSVQLAGPILAATAPSFHNLSISAVKHTSSLDLKEEDVPVKVELIEEKKFDDDDDDDIPLDNDSESDPLEALSVKAETLERKHTIHPCEECPRRFNTTNDLNKHKTTVHKHHRCDQCGETFRKQSHLKMHTRYHNEEICETKIGKLRSLIATTGSKFACVLCSKTFSQKGHLKTHIMAIHTGEKPYACTECDKRFVQRSNLSAHMRSRHEKPFKNDWHMSGENGEDQVDGKPFSCGICSKTFAMKSYLQSHVMAMHTGERPFPCTLCDRKYTQKSHLRAHMRIAHAVEKPFECDSCELRFDDAEELRKHAKIHADDKPLGCVTCGKVFQAESDLKKHIILHHGEASLLCDRSEIISDNVGKKRFPCDQCSKTFGWKSHLKTHIMAIHTGERPFNCNMCDKKFVQRSSLRVHMRSAHSEQKPLACDMCNKVFQAETNLKKHMIIHHGETENRDENHSKTDKRFTCATCSKSFGWKSHLKTHIMAIHTGERPFSCSVCDKKFVQKSYLRAHKLTSHSGLTFTCEKCNKRCTSASNLRIHMRFHTGEKPYACSKCNKSFKRNDSLKIHMASHRGEQFTCKVCAVRFNSKTTYQTHMRLHTSHLPPFLCLRCDEKFNTKTDLEIHNTKHHAADMPFSCDYCELRFDDKNVLKKHQLLQHEEKLTCDICNKSFHAKSALRRHMSIHSTEKPFACIICNKFYKQERILKKHMEIHTEEKQFACDRCDKKFYQKCNLTSHMRIHSGEKPYVCDRCGNSFNQKSHLRTHILFMHTSDRPYSCDVCSKQFRLKSCLRNHKMVHTGERPYPCTMCEKKYYKKSELKSHVTKMHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00702195;
90% Identity: -
80% Identity: -