Pste012367.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold271:148618-151763[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.23 7.7e+02 -0.6 0.1 17 50 19 51 18 52 0.78 2 2 2e-11 6.8e-08 31.6 0.0 10 61 92 142 86 157 0.83
Sequence Information
- Coding Sequence
- ATGCCACGGAAGAAGAGTTCGGAAGTAGTTCCAATTGCGAATTTATTACCAGCCAGAGAGACAAGTAAACGCAAATTGAAGCCAGTCATCAATCTTGACTATGTTTACGAAAGCCCCAATCCCAAAAAAACTAAGAAAGTAGATGAGCCAGTGAAAGAGAAGGAAGCAAAACCAGTTGCAGTCAAAAAGCCGGCCATAAATAAGATTTTAAAAAGCGCTTCAGTCTCCTCGGTGGCTTCTTCAGTATCCTCAGTAGACGCTCAGTTCTTGGAACCATTCAAATTCGGTTGGATCAGGGAAGTGATCTATCCAGCAAATAATGATGAGAAGAAAGTGGAAGTCCTATATTATACTCCCAGTGGCAAAAAATTGCGCACAAATGCTGAAATTGCATCAAACCTGACGGATAATCTGAAAATATCGAATTTCACAAAACAAAAGCATCCCATTACAAATAACGAAGAGCGTTACGAGAGGATCATTCGCTTAAAAGCCGAAAAAGAGCAAAAAGATGAAAAACCGATTGAAAAGCCAACTGAGAAAGCTCAAAAAGTGGAGAAGAAAACTAAAGTCCCAAAAACAACCGAGAATGGTGACCCAAAGACTGAGTCAACAAAACCAGAGAAAAAGGCTAAAATCCCAAAAGCCACTCATATTGTGAAGGATGCCACTCCGCCACCAGAAGTCAAGTCAAAACGTAAAATCATCCCAAAGCTGCCTAAAGGAGCCACTCCTCCCCCAACACCTAGACACGTTACGGCCTCAAGTCCAATCCCAGCACCAATTGTTATTTCACCTAAGAAAATTGCTCCTGCTCCAATATCTTCTGCCTCTGCTGTTGATGTGAATAAATTGCCACCAAAGAATTCTGTGGCCATAAAAGTAGGAAATATTGTGTTGCATGTCGTCCCAAAAACATTGGTATCGCCAGTAAAATCGCCAGTAGCTTTCAAGCAGGCCTTACCTGTTGCTCCTATTGTGCCAGCTGTAGTGATTGGTAAGAGAGTTCCTAAAGAGATAAAAATTGTCAAACAGGACAAAGCTATTAAGGATATCAATGGAACCAAAAATATTGAGGAGGAAGTTGTCAGCGCCCCAAAAGCAAAACGCGTGGCAGTTAAACGAGCTGATCCAAAACGTGTGGATTCTTCAGCTAAATCATCATCTAGTGAAGTTTCATCTCTGCCACCCAAAAAACGTCGCATGGATGCAACCGTTGCAACTACAGCTACACACTCTAAGGATCTCTTTGGTGAAGCTTCATCAGTCTTCAAAGTTCTCATCAAAGTGTTCGAGTTTCTGCCTTTGAAAGATCTTTTGAGCGCGGCATCTGTTTCTCAGATGTGGTACACTGTGAGCTGCCAGGAAAAACTTTTCCCTATTTTTGAGTTGAAAAACAAGAGAATTTCTGATTTGGCTGGCTTTTTGCTGTTTCTAAAAAGACATGGTTGCCAGCACGTGATTTTGGATAATGTGAGAATTGATCAATTTGGAGACCGACTTCCCAAAACTGCATTAGTTCTTCGACAACTGGAGATACATAATTGCAAAAACAAGGTGGCTGAACTTGTGTTGAAGCTACAAGTGACTGGGTTGCATAAACTGACTTTGAAAAATGTATCTGGCGATTGTGACTTTTCTCTTATGGGAATTCAAACACAACTTAAGGAATTAGAATTGGAAAAAGTTTCTTTCAAGTCCGAAAGTTTCCCTCTGGAACAAATGCGCAATCTTGAGCAGCTCTCCCTCTCCGACATGGAAAATTTGAAGCTGTATGAGGAAATTTCAAAGTTGTCTTCATCGTTGTTGGAATTAAAGATCAATAAGATCGTAAACCGCCAACTTGTAAGCACATTTCTGCTGAGCTTTGATAAGCTGCATTCATTGACCCTCGAGAATGTGGGTAGTTTTGCAAACGACCTGCTCATCACCGTTAAACAAATGCGTAGCCTTCAAAAGCTGACAATGCTAAACTTTGGCGTGGTATACAACTTTGACTTGCATTTGTCGCTCTGTCTGAATTTGCGAGAATTGACGCTAAAACCCAGCGATATTCAGTCGAACAGAGCAAGTGTCGTGAACTTTATTGTAGTGCTAGGATTGTTCAAGGCAAGAAGTTTCTTGAAGAAGTTTGAGTGGCTTATGATCTCCAAAGAGAAGAATCACGCTAAAGTCCTTGTTGAGTTCAGCAAGATGACAATATTCGAGAACTTGAAGAATTTGGCCACACGATCGAGCTTATGTGGTGTTGATGGAGCCACAGATCCTGATGAAGGCGAAAAGTTGGAAGAGAAATTTAAGAAAATCTTCGGATTGCCAGCTGATGCTACAAAAGGTGGAGATCCCGTCTTTCTTTCTGGCCCTACGCTGTGCGCTAACCTGCAAGAAAATCTCGATATCAACGACATTCAACTTACCATCAAAATGGCTCAAAGGCCTAAACTATGA
- Protein Sequence
- MPRKKSSEVVPIANLLPARETSKRKLKPVINLDYVYESPNPKKTKKVDEPVKEKEAKPVAVKKPAINKILKSASVSSVASSVSSVDAQFLEPFKFGWIREVIYPANNDEKKVEVLYYTPSGKKLRTNAEIASNLTDNLKISNFTKQKHPITNNEERYERIIRLKAEKEQKDEKPIEKPTEKAQKVEKKTKVPKTTENGDPKTESTKPEKKAKIPKATHIVKDATPPPEVKSKRKIIPKLPKGATPPPTPRHVTASSPIPAPIVISPKKIAPAPISSASAVDVNKLPPKNSVAIKVGNIVLHVVPKTLVSPVKSPVAFKQALPVAPIVPAVVIGKRVPKEIKIVKQDKAIKDINGTKNIEEEVVSAPKAKRVAVKRADPKRVDSSAKSSSSEVSSLPPKKRRMDATVATTATHSKDLFGEASSVFKVLIKVFEFLPLKDLLSAASVSQMWYTVSCQEKLFPIFELKNKRISDLAGFLLFLKRHGCQHVILDNVRIDQFGDRLPKTALVLRQLEIHNCKNKVAELVLKLQVTGLHKLTLKNVSGDCDFSLMGIQTQLKELELEKVSFKSESFPLEQMRNLEQLSLSDMENLKLYEEISKLSSSLLELKINKIVNRQLVSTFLLSFDKLHSLTLENVGSFANDLLITVKQMRSLQKLTMLNFGVVYNFDLHLSLCLNLRELTLKPSDIQSNRASVVNFIVVLGLFKARSFLKKFEWLMISKEKNHAKVLVEFSKMTIFENLKNLATRSSLCGVDGATDPDEGEKLEEKFKKIFGLPADATKGGDPVFLSGPTLCANLQENLDINDIQLTIKMAQRPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -