Pste002861.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- scaffold182:29810-34966[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.35 4.7e+03 -3.9 1.6 145 167 21 43 4 101 0.49 2 3 1.2e-106 1.7e-102 342.4 35.6 1 299 129 417 129 418 0.94 3 3 0.06 8.1e+02 -1.4 3.1 136 158 453 475 422 492 0.48
Sequence Information
- Coding Sequence
- TTGAATCAAATGGATCAAAAAACCTCTGATCAAAACGAGAGAAGAATTGGAAAAGACAGAACCAAGAGTGAAAACAAKAGTGATGAAGAATTTGAGTTTAGTAAAAGCGATATCGAAGAATTGGATAGTGTTTCAAGCCATGAGGACGTTGTTGAATGCATGAATCACCTTTTGATCATTGGAAAAGAATCTGTGAGCAGTGACTTAAATAATAATAGTGAGCAAGATCATGATATATTCAAATCACTACATAATGAAGAATCTATTGAGGATGAAGAAGAATCCTATAGTTCTTCAGCTGAGGATGATTCAAGAAAAAACTCTGGTGTGGTGGTGAATGAAGACACATTTATCATAGAATTCCTTGGCCAAAGCAATAACATAGCAGAAGCACGATTGGCAGCACGCAGGCAAGCAAGAGCAGAAGCACGGGACATTCGCATGCGAGAGTTGGATAGACAACAGAAAGAGCTGGAGCAAAATGCAGACCGGGCCTTTGACATGCAGCAATCAACTAGCATCTCTGATACTGTCTCTACTCCAAGATCTCGGTTAGCAGTAAACAACAATGCTGTGGTACGAGGGAATTCRATGTCTTCAAGAAGAAGTAGCGAAGACTCTTTAGAGGAGGAGGGGCGTAGCTTGAGAGATCTCAGGCATGAAATAAAGGATGTAGAAGAACGATTCCGTAAAGCCATGATAACGAATGCTCAGTTAGATAATGAGAGATCATCACAATCATATCAAATAGATTTACTTAAGGATAAACTGGAAGAGATGGAAGAGTCCTATGCACAGTTGCAAAGAGAACTGCAACGTGAGCATCGAGCCCATGAAGCTTTAAAACGCAACAATGATAAACTGACCGATGAGCTGAAAATGGTTCAAGGTCAGTTGAGAGAACGTGACACACTTATTGCTGAATACGGACTGGTGATCATCATTGTAGAAAATGAAGATGGAACAGATGCCAAAAGAGTTCTAGTCTCGAACGAAAATGCACAAGTTTTGGCAAGTATGGATGGATCGCTAGATGTTCGACTTAAGCGATTTGCCGAAGAAAAACATGAAATCGAAGCAGAAGTTCAGAAACTTAAACTCTTACTAAATGATACGAAATTAAAAGGAAGACGTTCAAGCTCAATGAATGGACCTGGTGACGAAGATGACTTTGAAGATGCACAGAGAGAAGCTAATAAAGCCATTTCTGACTACAAGTATCGACTTCAAAAAGCAGAACAAGAGATTGCCAGCCTACAAGCTAGTTTAGCACGCTCTGAAACTCAGGTTATTCGTTACAAAAGCACTGCAGAAGCAACTGAAAAATCTGAAGCAGATTTAAAAATAGAGAGGAGGAAACTGCAGCGTGAGAACCGAGAAGCAATGGAGCGACTAGAAGAGCTGGAAACATCAAATAATCATCTTCTAAAAAGATTAGATAAATTAAAAAATGCTAAAAGCGCGTTGCTAAAAGATCTTTGA
- Protein Sequence
- LNQMDQKTSDQNERRIGKDRTKSENXSDEEFEFSKSDIEELDSVSSHEDVVECMNHLLIIGKESVSSDLNNNSEQDHDIFKSLHNEESIEDEEESYSSSAEDDSRKNSGVVVNEDTFIIEFLGQSNNIAEARLAARRQARAEARDIRMRELDRQQKELEQNADRAFDMQQSTSISDTVSTPRSRLAVNNNAVVRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKDVEERFRKAMITNAQLDNERSSQSYQIDLLKDKLEEMEESYAQLQRELQREHRAHEALKRNNDKLTDELKMVQGQLRERDTLIAEYGLVIIIVENEDGTDAKRVLVSNENAQVLASMDGSLDVRLKRFAEEKHEIEAEVQKLKLLLNDTKLKGRRSSSMNGPGDEDDFEDAQREANKAISDYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEATEKSEADLKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -