Basic Information

Insect: Parnassius smintheus
Gene Symbol: ush
Assembly: GCA_036936625.1
Location: JAUPFT010000005.1:50167263-50171971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0049 1.6 11.6 0.2 1 20 113 132 113 134 0.94

2 8 7.4e-05 0.024 17.3 0.9 1 23 172 194 172 194 0.98

3 8 0.057 19 8.2 0.3 3 20 225 242 224 244 0.93

4 8 0.029 9.3 9.2 4.7 2 21 484 503 483 513 0.96

5 8 0.005 1.6 11.6 0.2 3 20 533 550 531 552 0.90

6 8 0.0072 2.3 11.1 1.3 1 23 607 629 607 629 0.99

7 8 0.24 80 6.2 1.0 1 23 667 690 667 690 0.96

8 8 0.15 50 6.9 0.7 2 20 723 741 723 743 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0049	1.6	11.6	0.2	1	20	113	132	113	134	0.94
2	8	7.4e-05	0.024	17.3	0.9	1	23	172	194	172	194	0.98
3	8	0.057	19	8.2	0.3	3	20	225	242	224	244	0.93
4	8	0.029	9.3	9.2	4.7	2	21	484	503	483	513	0.96
5	8	0.005	1.6	11.6	0.2	3	20	533	550	531	552	0.90
6	8	0.0072	2.3	11.1	1.3	1	23	607	629	607	629	0.99
7	8	0.24	80	6.2	1.0	1	23	667	690	667	690	0.96
8	8	0.15	50	6.9	0.7	2	20	723	741	723	743	0.92

Sequence Information

Coding Sequence: ATGAAAACAATTAAAGTAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCTGGAGAACCTCGTACGCCGAGCTCGGGAGGGGAGAAAGCGGCTTCCAGTGGAGAAGCGTCGCCTGCTTCAGGGAGTTCACCTGCAGCCTCTCCGCCACGATTACGTCTCAATGCAAGCCTTGCGACAGACCCAGCCCTAGCGCCGCAAGCTACACCCTTAAAACGTGAACCACCTTCCCCGTCACCACCTCCAGCGCCAAATTTACAAGCAAGAGAATACCTTGCACTGACTGCGGCCGCTTTTCCTGCTCTTATTCCAGCAAATACTCCACCCATCTATATGTGCAAACCATGTGGTATTCGATATTCTTCACTCAGCACGCTGCAAGCACATCAAGAGCATTACTGCTCGAATAGGCGGCCGAAACCACCAGACAGCGCGGAGACACCCAACGACGCAGCAGCTGACGAATCTAGCAGTGATGCGAAAACTCCGCGTCCACCTGGAAAACAGTACGCCTGTACCTATTGTTCTTACAGCGCTGATAAGAAAGTAAGCTTGAACCGACATATGCGAATGCATTCGTCTTCGCCTGTAAATAGTGGAACCCCTGCGCCACCCCCGACCTCAAACGGGGAAGTGAGTGAAAGCCCACCAGCACCGGATCGGTACTGTGCTGATTGTGATATTCGCTTTAGTTCTATTAAAACGTATCGTGCCCATAAAGCTCACTACTGTAGCACAAGACAGGTTGTTAAACAAGTCTTAGCCGCGGCAAGAGGAGGCTCAGTGACATCAGGGTCGGCTCCGCCTTCTCCCGGAGCCACACCACCCGCACAAAACCAATATGCACTCGCGTTACCAACAAATCCAATTCTTATCGTGCCGTATTCGCTCTTGAGAAGCGCTAGCACACTGCCAGGTGCGACTCTGCCAGATCCAGACACACCGTGTTTCCTGTTACCAAATGGAACTTTCCAACCACTAAGTCGAGCTTTACCAAATATTAACGCAGATGGGAAAGACTCGGAAGTATTGAAATCAGCTAATCGTCCACGCgagccgtctcgagatggtgcaGCACCTCTCGACCTTAGCGTTAGACGATCGCCTGAATCTGTAACAGCGGACGACCAAGAGAAAGAAAACAGAATACGGTCAACTACGCCTGAGCAAATCGTTTGTGCACCATCATTACCTGGATCACCAGAAACTCCTTCCCCTTCCCGACGTTCTTCTTCACCTAGTGGAGAAAGTTCGCCGAAAAGACGGCGTCGTAATTCTAGAGGCCCAACTCCAAAACCACCAAGTATACCATCGCCACAAGAAGATAAATTCACTCCGGTAGTCCCACCCGCAATTCTACCACCGGCGTTAGCGTTACGACTTGCTTCAGAACTTCCAGTAACGCCCGCATCTCCTCAAGTCTTAGTTAAACAGGGTGTCTCGAAGTGTAAAGAATGCAACATTGTCTTCTGCAAATATGAGAACTATCGGATCCATAAGCGACACTATTGTTCTGCTGGCGGTTGTGACGAGCGAGCGAGCCCTGCTCCTCCTGAACCTGGACCACCGCCACAATACCGCCAACTGATTTGCCTGGCTTGCGGAATTCATTTCAGTTCCCTCGACAACTTGACCACACATCAATCTTATTACTGCACGAAGAGAGAAACTAGATCGCCTCGAAGCTTGCCCGAAGTAACTCGGCCTGCTTCGGGGCCTGAAGGTGGATGGAAGTGTCCATGTTGCGAGGTGATATCACCCACAGCGGTAGCGGCGCAGCGGCATATGGAAGCTCACGCCGGGGTCAAGGCATTCCGTTGCACTATTTGCCGGTACAGGGGCAATACTCTACGCGGGATGCGCACGCATATACGAATGCACTTTCGTGAGAAGCCCTCTGATCTACAGGAGGAGAGTTTCATTTCTTGCGTACTCGAGGAGGACAATCGCGAGACGACCTCACCGAGCCCGGCTACTGCCGGTGACCGAATCCACCGCTGCAGCAGTTGCGCCTACACATCCACGTATCGAGGCAACGTAGTGAGGCACGCGCGTTTAGTCCACTCCACTGAAGAGCCTGAGCCCGAAGAACAGACGTCTCCAATCCCCGCTGCTGACATAAAAAAAGAACCGGATGCTGAAATGGAAGAAACCCCTAATTATTGTAAATCGTGCGATATATCGTTTAAATATGTCAATACTTATAAAGCTCACAAACAGTTCTACTGTACCGCTGCTAATCAAGACGCTACAGCTAATAATAATGTACCCGCGCCCCCGCCACCACGAGTTAATGACACACCTGTACTATAA
Protein Sequence: MKTIKVGEDEEWGNESEAMPGEPRTPSSGGEKAASSGEASPASGSSPAASPPRLRLNASLATDPALAPQATPLKREPPSPSPPPAPNLQAREYLALTAAAFPALIPANTPPIYMCKPCGIRYSSLSTLQAHQEHYCSNRRPKPPDSAETPNDAAADESSSDAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHSSSPVNSGTPAPPPTSNGEVSESPPAPDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQVLAAARGGSVTSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPLSRALPNINADGKDSEVLKSANRPREPSRDGAAPLDLSVRRSPESVTADDQEKENRIRSTTPEQIVCAPSLPGSPETPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPSIPSPQEDKFTPVVPPAILPPALALRLASELPVTPASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGCDERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSLPEVTRPASGPEGGWKCPCCEVISPTAVAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESFISCVLEEDNRETTSPSPATAGDRIHRCSSCAYTSTYRGNVVRHARLVHSTEEPEPEEQTSPIPAADIKKEPDAEMEETPNYCKSCDISFKYVNTYKAHKQFYCTAANQDATANNNVPAPPPPRVNDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01148406;
90% Identity: iTF_01143441;
80% Identity: -