Psmi074708.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- RREB1
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000028.1:23572352-23580449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.041 13 8.7 0.3 1 23 111 134 111 134 0.96 2 12 7.4 2.4e+03 1.6 1.1 1 11 176 186 176 197 0.86 3 12 0.018 5.8 9.8 0.1 1 23 325 347 325 347 0.97 4 12 0.00095 0.31 13.8 0.4 1 23 356 378 356 378 0.99 5 12 0.00059 0.19 14.5 2.0 1 23 384 407 384 407 0.97 6 12 0.0024 0.78 12.6 1.6 1 23 760 783 760 783 0.96 7 12 0.0002 0.065 16.0 1.3 2 23 974 995 973 995 0.97 8 12 0.02 6.6 9.6 5.3 1 23 1001 1024 1001 1024 0.97 9 12 0.17 56 6.7 1.4 1 23 1057 1081 1057 1081 0.90 10 12 0.38 1.2e+02 5.6 0.2 1 23 1105 1128 1105 1128 0.86 11 12 0.018 5.9 9.8 0.3 2 23 1168 1189 1167 1189 0.92 12 12 2.8 9.3e+02 2.9 7.2 1 23 1195 1217 1195 1217 0.94
Sequence Information
- Coding Sequence
- ATGAATTGCCTGACTCAACCCATTGTTGGTATTTCTTGGAATAGTAAAACGAAAACGCCCCAGGTTATTCAAACAATCAGGAATTGTAATATTTTAACGtttgttgttgcagaaatcaaaACAGAAGTCATCAGTGAGGCAAAAGTCGAGACGGAGGGACAGCAAGACGAAAAAATGAAGTTGGAAAATGAGCCTCGTGCTATTCGCACTACCAGCATCGACAGCGATAATAGATCAGATCGCAGCGAAGAAGAAGACTCCAGAAGGGCACGGAAAAGGGCAGCGTCAACGTCCCCATCACCTATTCCATTAGACAAAAGAACAGCTCGCTTTGAGTGTCCGAAATGCCTACAGCGGTTTGATTCAGCAAATGCCTTTGACATTCATCGGTTCACAGCGCATGGAGATGAAACTAGAAGTGGTTATGATGATCTTACTTTTATCGATTTCTCTGGCAAAAAATTCCCTGAAATAGCGCGAGGAGTTTGCGAACGCAACACTCATATTTCCATAGCAGAGCAGCGCTATAAATGTGATTTTTGCACGCGAGAGTTCCCCTGTGGCCAAGCCCTGGATATTCATAGAAAATCCTGCTCTAATTCCGCAAAACTTACCAGTCCAGAAAGAGAGCGTAGGGAAGACTTCTTTGCAAAACTGGATCTAAGGAACAGGTCTTTCGGTATTCCGGGTACTTTGACACCACCTATGGAGAGATTTACACCTAAATTCGACGACGCACACTTAGGTGGCAACGGTATAAGGCATATCGATACCGCTAGGGACTTGGCTGATATTCAGTCAATCTTAAACGTCACGTCAGCTGGAAGTCTAttagagaggctaactgggactCGGGTCGCTTTAGAAAATGCTGTACTTACACCTCCTGATACAATAGTAAAGGAACGTGAACAAGAAGAAACTCAGGACAACTTTGCAGCAGAATTCAGAAGAATGAAGCTGCGTGGTGAGTTCCCATGTCGATTATGTCCAGCAAAGTTTCCCAATCTAAGAGCATTAAAGGGACATAACAGAGTACATCTCAGTGGAACTGGGCCCGGTCCGTATCAGTGCAACATGTGCCCTCATGCGTCTTTGGACAAGGCAGCTTTAGTTCGCCATATGCGAACTCATAATGGAGACCGTCCTTACGAATGCGCGGTATGCAATTACGCATTTACCACTAAAGCTAACTGTGAGCGTCACTTACGTAATCGCCACGCTAAGGTAACTAGAGAAGATGTCAAACGCTCTATTATTTACCATCCATCCGAAGATCCAAATAATGATGAAGTCAATTCAAAGCTAGCTCGAGAAGAAGTAAAAAGATCGCTCGCGTTTCACACACCTGAAATTGAACGACGCAATGAATCAACTGGCCGTGAGACTCCATTAACACACTACACTCCGAGTTTCATTAGTGACAGACACCCAGTTACTGCTTTAGTGACTAAAGCATTGCCAGAATCACCCACTTTGACACCAAGAGAATCTGAACAATCTCTACCTAGAATCAAAGTTAAGGGTATTGGACAGTTGACGCAAATACCTGAATTCAGGCAACCAGAGGCTACATTTAAAACCAATGACATTCCACCAGAACCTTACGATGAAGACGCACCAGTTGATCTCAGTACAAGTGACAATAACAGCTGCGATGTCCTCGATCTCAGTAAGAAAAAACGTGACATAGATGAAGATGAACCTAAATCAATTCCTCAACCGGGTTTTGAGGCAAACTCTGCTACAGCTGCAGCATCAGCAGCAGCAACAGCGTTCGAAAAGACGAGATTTCTTCTAGCGCAGCAAAGACTTTTTGAATCGTCTCTCCCGAAACTTGATCCCGCTTATTACGCAACTCAGCTATCTCAACTATACGCTGGTACTGTTCCCGGACTTGCTGGCCTACCTCTTCCGCCGTCTGCATTTCCAATCAATCCTTACTTTCTTCAGACATCGTTTTTTCCTCACCCAACTGATTCGCAGGAACTTGCCGAAATAAAACAGCgtatacaaaaagaaataattCGCGGTCTTAGCATGTCAGGAGGACGATTAGTCAATGGTGACCAGGAAACACAACCCAAACAAGAACCTGAAGAAGAAGACAACAAATCTCTCCCTCAAACTACTTCTCCTACTCCACCTCCTCGTACTGAATCTCCACGCCCTTTAAGTAGTAACATCGTGCCTCAAACCGATTCTGTTAAGATGGTCATTAAGAACGGTATTCTAATGCCAAAGCAAAAACAAAGGCGCTATCGCACCGAAAGGCCATTTTCATGTTCTCAATGTTCGGCCAGGTTTACTTTACGCTCAAACATGGAACGTCATGTAAAACAGCAACATCCACAGCATTGGAGCGTTCGAAGACCAACTCCAAGAGCTCCTCCGCCATATCCCACCCCAGATAACTTGGCTGACCGCGTAAAATTCGCTCTCCTCGCGCGACATCTTGAAAGACCGTTGCAACAAAATGATCGGTCCCCAATCCGTAGAGATTCAGACGAAGTGGCTGACAACGAGGAAGACGAGGACGATACTTTAGTCATTGATGAAGAGCCAGAAACAGACGTGAAATCTTCAGAGCATACTGCAGCGCACAAGGCTGCTGCGGAAATTTTAATGGCCACACGTCAACAAGAACTTCACAAAGATTTCGATCTTAAAATAGCTGGCAATCTAATCAACAAACCTGTACCCATTACCACCGATAAAACAGAAACTGGAACGGACCCTATCCAAATTTCTGAACCTGTGACTGTCCCAACGCGCAGTGATGAAGAGGAAGACGAGGAAGGCCTTGTCGCATCAACTAGCGAAGGCAATAATTCTGGAAGCGATGAAAATAAATCGGAATCCGACACAACTCTACCGCCTAAGAAGAAATCCGCATACAGTCTGGCCCCAAATCGCGTCTCATGCCCGTATTGCCATCGGAAATTCCCCTGGTCCTCTTCACTCCGTCGTCACGTTCTAACACACACCGGACAAAAGCCTTTCAAATGCCCCCACTGTCCGCTCCTTTTCACCACAAAATCCAACTGTGACCGTCATCTCTTACGAAAACATGGCGGCTCCGCAAGGGCTATCTTAGCAGAACCCATTTCTGACTCATTGTCTGTACCTCAAAATACAAATGAAACTAGAACGGTCCCAGAAAGACCTTTCAAATGCGCCTCATGTCCCACCAGCACGTTTTCGTCAATGGAAACTCTAAAAAAACATATGTCATCGCGTCATGGGACAAGTGATTCTCAACCCGGGTCTCCAAACCCTGAAGGAAATGAGGAAGCACCGGATGGTCTAGTATTTAAGTGCCATCTTTGTGAGGGATCTTTTGGGGACAGAAGCAGTGCTCTAGGACATTTGGCAGCTAATCACGCTGCAGAATACGAGCAATTGGTCAGCAAAGGGGCGTTGGACGGTACGAGCGACCGAAGCGAAAGCGCAGATGATGACGAAAGGGGAAAATTTCCTGATCATGCCAATAGAAAGGTGGTTTGCGCCTTCTGCATTCGTCGCTTCTGGTCTGCGGAGGATCTTCGTCGCCACATGAGGACGCATTCCGGCGAACGACCTTTCGCCTGCGACCTTTGTCGACGACGTTTCACATTGAAGCACAGCATGTTGCGTCATTGCAAGAAGCATCGCGATGAAATCACCGATGATGAGGAAGCTACACCGCCTGACACACCGCTGGAACCTGAAAATGTTACTAACGGATACCGCTACCAAGAGGATGACGGATCGGGCAACGAGATACCGTGCAACGTTAACAACAACAATTCTCCACCATCCGCCCCTTACGACAAGAAGCTGAAGCTCGAAATGACTTCACGAAAGTACTCATCAGAGGCCGAAAATGACGCTGAAAATGGTGGCGATCTGATCGGTAAACTCCTTGGTATACCGGACAAGACTATCATAAACAAACTTCTTTCCTCCGCGGACGAGGCGGCGAAATTCCTCGGGGTGAACAAATGA
- Protein Sequence
- MNCLTQPIVGISWNSKTKTPQVIQTIRNCNILTFVVAEIKTEVISEAKVETEGQQDEKMKLENEPRAIRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPIPLDKRTARFECPKCLQRFDSANAFDIHRFTAHGDETRSGYDDLTFIDFSGKKFPEIARGVCERNTHISIAEQRYKCDFCTREFPCGQALDIHRKSCSNSAKLTSPERERREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDAHLGGNGIRHIDTARDLADIQSILNVTSAGSLLERLTGTRVALENAVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEIERRNESTGRETPLTHYTPSFISDRHPVTALVTKALPESPTLTPRESEQSLPRIKVKGIGQLTQIPEFRQPEATFKTNDIPPEPYDEDAPVDLSTSDNNSCDVLDLSKKKRDIDEDEPKSIPQPGFEANSATAAASAAATAFEKTRFLLAQQRLFESSLPKLDPAYYATQLSQLYAGTVPGLAGLPLPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVNGDQETQPKQEPEEEDNKSLPQTTSPTPPPRTESPRPLSSNIVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDNLADRVKFALLARHLERPLQQNDRSPIRRDSDEVADNEEDEDDTLVIDEEPETDVKSSEHTAAHKAAAEILMATRQQELHKDFDLKIAGNLINKPVPITTDKTETGTDPIQISEPVTVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTTLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDSLSVPQNTNETRTVPERPFKCASCPTSTFSSMETLKKHMSSRHGTSDSQPGSPNPEGNEEAPDGLVFKCHLCEGSFGDRSSALGHLAANHAAEYEQLVSKGALDGTSDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHCKKHRDEITDDEEATPPDTPLEPENVTNGYRYQEDDGSGNEIPCNVNNNNSPPSAPYDKKLKLEMTSRKYSSEAENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- iTF_01155833;
- 80% Identity
- -