Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000025.1:5542006-5577932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.1e-05 0.0035 20.0 2.0 1 23 232 254 232 254 0.99

2 11 1.8 5.9e+02 3.5 3.1 1 23 288 310 288 310 0.92

3 11 0.014 4.5 10.2 0.9 1 23 315 338 315 338 0.94

4 11 0.0043 1.4 11.8 1.4 1 23 342 365 342 365 0.93

5 11 0.025 8 9.4 0.1 2 20 378 396 377 398 0.94

6 11 0.00039 0.13 15.0 2.3 2 23 410 431 410 431 0.97

7 11 0.19 63 6.6 1.6 3 23 439 460 437 460 0.90

8 11 2.4e-05 0.0079 18.8 1.5 2 23 483 504 482 504 0.97

9 11 3.7e-05 0.012 18.2 2.7 1 23 510 532 510 532 0.99

10 11 9.9e-06 0.0032 20.1 3.2 1 23 538 560 538 560 0.94

11 11 4e-07 0.00013 24.4 1.7 1 23 566 589 566 589 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.1e-05	0.0035	20.0	2.0	1	23	232	254	232	254	0.99
2	11	1.8	5.9e+02	3.5	3.1	1	23	288	310	288	310	0.92
3	11	0.014	4.5	10.2	0.9	1	23	315	338	315	338	0.94
4	11	0.0043	1.4	11.8	1.4	1	23	342	365	342	365	0.93
5	11	0.025	8	9.4	0.1	2	20	378	396	377	398	0.94
6	11	0.00039	0.13	15.0	2.3	2	23	410	431	410	431	0.97
7	11	0.19	63	6.6	1.6	3	23	439	460	437	460	0.90
8	11	2.4e-05	0.0079	18.8	1.5	2	23	483	504	482	504	0.97
9	11	3.7e-05	0.012	18.2	2.7	1	23	510	532	510	532	0.99
10	11	9.9e-06	0.0032	20.1	3.2	1	23	538	560	538	560	0.94
11	11	4e-07	0.00013	24.4	1.7	1	23	566	589	566	589	0.98

Sequence Information

Coding Sequence: ATGGGGGAACTCTTAGCATGTCGGATATGTCTGTCTTCAGACGTtaagttatataatttttttaaatacagattGGCGGAACCTTTAAGAATTCTTACCGGAATagaaATATCAGAATCTGATGGTCTTCCACCCCATATTTGCAGTTACTGTAGTTGTTTACTGCTCAAGTCCGTAGCATTCAAGGAAAAATGCTGCAACTCGGAGGAACTGCTCAAGTTCTCTTTGATGGAACACAATGTGCTGTCTGTAGACTACCTGGAATCAATCAGAAAAGAATTGCAACTAACCCTGCCCTACTGCACCGTGATTACCAGGGAATGTGATGAAGTCCCCGAAGATATTATTGATGACTCTGACCTTATGATAAAAGAAGAAGTGGTTGAGACAAGTAACACATTGGTCGAATTTAAAATTGAGAATTTAACAGATTCGTCCACAGAGACAATAAAACCGTATAGAAAAGTCAAGAAAGAGAAAGAGAATGAAGTACTTGATGTTAAATTCGAAAATGACATTGAAACTATCAATTTTGATAATGATGAACCAGATCAGTCGGCTCCGCTAGATGACAGTGATGGTCAAGAGGATCTAGAGGCTATGAAGGATATCGAAGTGGTTGTATTAACCAAGGAGCAACAAATAGAAGAGGTTCAAGCTAGGAAGACATCAGCAAACTATATAAATTCGTTTTACAAATGTGAGCAGTGTTACAAGGGTTTCATGACTGAGTCAACACTTAAAAATCACATGCTCAAGCATGATCCGAAGAGGGGTGAATACGAATGCGATGTTTGCTGGGGGCGTTGGCCGGAACCTCGGTTGCTTCGCTGGCACGTAGTGTCGTCGCACGAGAGGAAGTACATCTGCAAGCTCTGCGACCATGTCTCCAGGTCCAGCCACCGAGCAAGAGAGCACAGTAAATGGCACACTGGATTCACATTTGACTGCCAGATATGCGGGGCTAGCTTTGCGAAATCAACAAGTCACCTCACCCACATAAGGCTGCAGCATCCATCCAACCACTGCTGTGACGTCTGTGGAGAGTCGTTCATCGGAGAGTACGGACTCAGGATGCACAAGACACGAGCTCATAAGGATCTGGAGGATGACGGTGCTAAGGTGGTGCTGCAGTGCGGAAACTGTTCAGCGCAGTTCTTCAACTTGGAAGCTTTGAAGCGTCATCAAGAGGAAACTGAGGGCGCTGTATGTCAAGCTGACGTCAGGTCATGTCCACACTGCGGTGAAAGCTGTTCCTCCGATGAAGTACTGAAGGAGCATATGAAGAGTCACCAGAAGGAAGAGCCCGTTCATTGTCAGGATTGCAATAGAGCGTTCGCGAACGAGCGTTCCCACGCGATCCACTATCAGCGCGTGCACCTGGGCGTGAAGCTGAAGCAGCAGCGGCCTCACACCGCCCGCCAGCTCAAACGCTCCGCCGACATGGTCTGCGAGGTCTGCGGCAAGAAGTGCAACACCAAAGCTACACTGATGTACCACCAGCGGATCCACACTGGCGAGAAACCGTACCAGTGTAGCCACTGCCCCAAGAACTTCAGCGTGTACCAGCGGCTGCAGATCCACGTTCGAACCCACACTGGAGAATCCCCGTACCAGTGCCAGCACTGCCCCAAGGCGTTCAAACACAAGGCCGCTCTGAATAGACACGATCGGGTACACACGGGGGTGAAGCCATACAGCTGTCCGCACTGCGGCAAGTCCTTCTCGCAGTCCAACTCCATGAAGCTGCACGTGAACACGGTGCACCTCAAGATGCCGGCCCCCTACCGCAGCAAGAAGAACAAGAAATAA
Protein Sequence: MGELLACRICLSSDVKLYNFFKYRLAEPLRILTGIEISESDGLPPHICSYCSCLLLKSVAFKEKCCNSEELLKFSLMEHNVLSVDYLESIRKELQLTLPYCTVITRECDEVPEDIIDDSDLMIKEEVVETSNTLVEFKIENLTDSSTETIKPYRKVKKEKENEVLDVKFENDIETINFDNDEPDQSAPLDDSDGQEDLEAMKDIEVVVLTKEQQIEEVQARKTSANYINSFYKCEQCYKGFMTESTLKNHMLKHDPKRGEYECDVCWGRWPEPRLLRWHVVSSHERKYICKLCDHVSRSSHRAREHSKWHTGFTFDCQICGASFAKSTSHLTHIRLQHPSNHCCDVCGESFIGEYGLRMHKTRAHKDLEDDGAKVVLQCGNCSAQFFNLEALKRHQEETEGAVCQADVRSCPHCGESCSSDEVLKEHMKSHQKEEPVHCQDCNRAFANERSHAIHYQRVHLGVKLKQQRPHTARQLKRSADMVCEVCGKKCNTKATLMYHQRIHTGEKPYQCSHCPKNFSVYQRLQIHVRTHTGESPYQCQHCPKAFKHKAALNRHDRVHTGVKPYSCPHCGKSFSQSNSMKLHVNTVHLKMPAPYRSKKNKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01158160;
90% Identity: iTF_01158160;
80% Identity: -