Psmi043058.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000016.1:1160254-1168226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00054 0.18 14.6 1.0 1 23 306 329 306 329 0.92 2 12 0.0049 1.6 11.6 2.3 1 19 346 364 346 368 0.92 3 12 2.8e-05 0.0091 18.6 3.8 2 23 374 395 373 395 0.97 4 12 0.00011 0.035 16.8 0.8 1 23 399 422 399 422 0.92 5 12 1.5 4.9e+02 3.8 4.1 1 21 425 445 425 447 0.94 6 12 0.00015 0.049 16.4 0.3 2 23 527 548 526 548 0.95 7 12 0.38 1.2e+02 5.6 0.6 2 23 568 590 567 590 0.95 8 12 5.8e-07 0.00019 23.9 3.3 1 23 596 618 596 618 0.98 9 12 0.00045 0.14 14.9 2.5 1 23 623 645 623 645 0.98 10 12 0.00012 0.041 16.6 1.2 2 23 652 674 651 674 0.96 11 12 0.25 82 6.2 3.5 1 19 682 700 682 701 0.87 12 12 0.031 10 9.1 3.2 3 21 714 732 713 735 0.88
Sequence Information
- Coding Sequence
- ATGGAGCAAGAGAAATTTGCCACGAACACTGAGGTGTTATATCCGGTGTTGTTTATACCGAAGAAGTGTACCACGCTAGAAACCACCAGTGAATCGACTGACGATGTCTTTATAGAACTGAGCATCACATCAGCGGACATTGAAGGTAATGAATTGTGCTTGTACTCAGGTGATTGTAATGTGAAACTCATAGACAGTTACGATGTTAATGTACATGAAGTTGATTCTAATTCCATGGCTGATTCCAATGATAGTGATCAAATACAAATAGTAGCAGAAACAAGCAATCAAAATTCTTATCTTCAGGACACTCAGTCCCAAGTGTGGATAGACCCAATGCGAAGTCCGTATGTGTATAACAATTACGTCGAGACAGAATCAAaagagaaattctcagtatatcGTCATCAAACTGGCTCCGGCCATGTAACCGTTGAAcaacataatacctatataacacaaaatgTGTACAACTATTCAGAGCCCAAACATTATTCATCGGCTGCGGAATTTGAACATAAAAAGTTTAGAAAAGTGCAAACAAATGATACATATCAACAGAAAAACTCTGAACCGAACAATGCGTATGAAGATGATGAATTTGAGTGTGGAGTGATTCTATCTCAGCTATCTGAAGagataattaatgaaaatgaaacAAGAGCCCGAGAAGAATCCCGTTACGTAGACTTGCAGAGTGAGAATGGTGCACTAAAACAGCTGATGTCGTCGGATATACAATCACTGTCCAAGCAGCATAAAACTATACTGTACATAGGTCATGACTCTCAATCTGGACAAACCATCCAGAAAATTGCAGTGAACGATCCATCTTTGGAGTGTGTTGGAAGCAATGAAATTGATCATGAATTGGTTGTTGaaaacaccaacAACAAAAACCCCAACCAGAAGAAATATCAATGTGACAAATGCAAGCAAATATTCGATCAAATATCTACTTTCAAGCAGCACATGGGGGGAAACCATAGAACCATTAAAGCAAAACGCGTCTCTGTTTCTGAAagcaaaattaaatacatttgcaCAGAATGTGGCAAGACCTTGAAAAACCAGGAGAAGTTTAGGCTACACTGCCTTGGCCACGGCGATCCAGAACTAGAATGTAATAAGTGCCACAAAGTTTTCGCCTCAAAATTCACTTTACGCACCCACCGTAAAATACACTTAAGGAAACACTCGTGCGATTATTGCACGAAGACGTTCACGAAAATTGACAACTTGATCATTCACGTCGCCAATTTACATTATATCTTCATGTGCCGGGCTTGTGATTACACAACTAAGAAATACCAAGATCTGCAAGAGCACCAGAAATGTCATTTGAGTCCACGGGAAAGTACCGACACGGACTCTAGCATATCTTCCGACAATGGCATCACACACACTAACGTTGTCACCAAAACGAACACGCCATGCccaaaagtacaagtaataaatCCTGTGAACGAAAACTACGTCACCCAAAAGAAAATAAGAGAGGCCAATTCAATTATAGCTAAAGTGATGTCTAATAAAGTTTTTCTACTTCATGGAAAGAAATACAAAAGATACAAAAAGgtttGTGACGTCTGCTTTAAGTCCTTCGACCGGATTGGAGATTTGAAGAGGCATCTCATAGAACACGTTATTAGAAGCACTCTAGCTAAAAATCCAGTGAACAAATACGGCACCCTCAACATGCAATGCGAGGTATGCCGTTTGGAAACCTTctctaaagtaaataaatataaggcacatttacgcgaacacgctAAACTCACTCTGTACCAATGCACGCTCTGTAATAAGTCTTTTAGTGATTCCAGTAACTTCTCTAAGCATAAAAAAGTTCACGGCGTCAAGTACTTTCAGTGTGATCTTTGTCAAAGAAAATTCAATTCGAAGAAAATGATCACACAGCACATGGAGTACCACAACAACAATTCACCGATTCCTTGTTTTTATTGCGACAAGGAGTTTCATTTCGAATCAATgctaaataaacatattaaatccGCGCACACCAAAGAATTGGCGGCCAGATTCCGATGTAAATTTTGCCACAAATATTTCAAAACGTTAAAGGAAAAGTGGGACCATGAATGGATCATTCATAATGTTAGAAAAATGATTGTCGACTGTCTTATATGTGGCTCgaaatttagaaaatattccgAACTGAAAAGACATTGTCGTGATACTCACGAGTTAGTAATATCAACCGCCAAAACCTTGCTTGTTGCTAATGAACGAGAGAACCTAGGTGGTGAGAATTGA
- Protein Sequence
- MEQEKFATNTEVLYPVLFIPKKCTTLETTSESTDDVFIELSITSADIEGNELCLYSGDCNVKLIDSYDVNVHEVDSNSMADSNDSDQIQIVAETSNQNSYLQDTQSQVWIDPMRSPYVYNNYVETESKEKFSVYRHQTGSGHVTVEQHNTYITQNVYNYSEPKHYSSAAEFEHKKFRKVQTNDTYQQKNSEPNNAYEDDEFECGVILSQLSEEIINENETRAREESRYVDLQSENGALKQLMSSDIQSLSKQHKTILYIGHDSQSGQTIQKIAVNDPSLECVGSNEIDHELVVENTNNKNPNQKKYQCDKCKQIFDQISTFKQHMGGNHRTIKAKRVSVSESKIKYICTECGKTLKNQEKFRLHCLGHGDPELECNKCHKVFASKFTLRTHRKIHLRKHSCDYCTKTFTKIDNLIIHVANLHYIFMCRACDYTTKKYQDLQEHQKCHLSPRESTDTDSSISSDNGITHTNVVTKTNTPCPKVQVINPVNENYVTQKKIREANSIIAKVMSNKVFLLHGKKYKRYKKVCDVCFKSFDRIGDLKRHLIEHVIRSTLAKNPVNKYGTLNMQCEVCRLETFSKVNKYKAHLREHAKLTLYQCTLCNKSFSDSSNFSKHKKVHGVKYFQCDLCQRKFNSKKMITQHMEYHNNNSPIPCFYCDKEFHFESMLNKHIKSAHTKELAARFRCKFCHKYFKTLKEKWDHEWIIHNVRKMIVDCLICGSKFRKYSELKRHCRDTHELVISTAKTLLVANERENLGGEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154498; iTF_01159973; iTF_01159960; iTF_01159961;
- 90% Identity
- iTF_01159973;
- 80% Identity
- -