Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000010.1:12161037-12185889[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00017 0.054 16.2 3.4 1 23 235 257 235 257 0.98

2 9 0.00016 0.051 16.3 6.5 1 23 263 285 263 285 0.96

3 9 5.9e-05 0.019 17.6 4.5 1 23 291 313 291 313 0.99

4 9 0.00076 0.25 14.1 1.3 1 23 319 341 319 341 0.96

5 9 1.1e-05 0.0035 19.9 1.0 1 23 347 369 347 369 0.97

6 9 9.5e-06 0.0031 20.1 0.0 1 23 375 397 375 397 0.97

7 9 3.5e-05 0.011 18.4 0.4 1 23 402 424 402 424 0.96

8 9 0.00059 0.19 14.5 2.0 3 19 432 448 431 454 0.90

9 9 1.5 4.9e+02 3.8 4.2 1 13 549 561 549 563 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00017	0.054	16.2	3.4	1	23	235	257	235	257	0.98
2	9	0.00016	0.051	16.3	6.5	1	23	263	285	263	285	0.96
3	9	5.9e-05	0.019	17.6	4.5	1	23	291	313	291	313	0.99
4	9	0.00076	0.25	14.1	1.3	1	23	319	341	319	341	0.96
5	9	1.1e-05	0.0035	19.9	1.0	1	23	347	369	347	369	0.97
6	9	9.5e-06	0.0031	20.1	0.0	1	23	375	397	375	397	0.97
7	9	3.5e-05	0.011	18.4	0.4	1	23	402	424	402	424	0.96
8	9	0.00059	0.19	14.5	2.0	3	19	432	448	431	454	0.90
9	9	1.5	4.9e+02	3.8	4.2	1	13	549	561	549	563	0.91

Sequence Information

Coding Sequence: ATGTGTATGCCAACGCCAAGTAATGTGTCGGGCTTCGGTTATTCATGGGGTTTTACCAGTTCCGCCGATCTCACGAAGTGTGAGGTGGAGACCCCTAGCAGTCTAAGTTATACTTTAGGAAACACGGTTTCACCAGAAACCACTTTGACTGTTATGTCACACAAGACTCCACAAGTGCAGGAAAAGGTTGGCACAGTTGCAGTGGCAGTGTCAAATTCAGCAGCACAGGTCACAAGGGTAGTAGGAACACCAGTCACAGCACGTAGAATGTTTGTTGTAAATGAGGCACCTGCACACACCTTAAACAGGGTTACACAGCAAAATCAAACTGCCACAATACAAACAACAAATTTGGCATCAAAACCATTTCTAACACCAATTGGTCCTATCCAGTTAACGGCAGAAGAATGTAATGAAATTTTAATGAAACGAGCACTACAAGCTCAGGGAATAGCAACGCCGGTAATAGATGCATCACAATTAAACCATACATTGTTAAATGGCAGTCTGAAAACCATAACAGAGGTAGCTCAGTCACAAGCAGACACAATTCAAACATCAACTATTCATCAACACTTGTTGCATACCAAGCAAGAGCCTGGGACAACAAATAATTCACCCAAAGCAATGTTTTCACAGACAGAGCTGCTGAACACTGCGGTGCTGATGACGAGTGCTCCACCCGCCGTTAAAGAGCGGCCTTATTCGTGCGACGAGTGTGGCAAGTCATTCCTGTTGAAACACCATCTAACAACACATGCAAGGGTCCATACTGgtgAACGCCCCCACGTATGTGCACATTGCGGTAAGGCATTCGCACGCAAGCACTGTCTCAATACGCACTTGCTGCTTCACTCTGCAGACCGGCCCTACAAGTGTCAAGAGTGCAAGATGGCGTTTACACTGAAGCATCATCTTGTTACGCATTTGAGGGTGCACAGTCGCGGGCGGCCGTTCATGTGCGGCGAGTGCGGGCGCGGATTCCCGCTGAAGCGACACCTCGTCACTCACAGCAAGTACCACGCCGGCGAACGACCATACGTCTGCAGCGATTGCGGCGAAAACTTCGCGCAGAAGGACCACCTGGTGATGCATAGCCGGTTCCACGGGTCGCTGTCGCCGTTCGTGTGCCCGGACTGCGGCGCGGCGTTCGCGCGCAAGTTCCAGCTGGTGCAACATGGGCGCGCGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGCGCACCCTCGTGGCGCACATGAAAATCCATACGGGAGAGGGAGTTGTTGCGTGCTTCGAATGCGGCGAGGCGTTCAAAAGTAAATCAGAGCTTCAACAACATTGTAAAATGACAAGACACTGTTTGAACACGCCACAGACGCAACAACAGCAAACTCAGCAACAACAACAAGTGCAACAGCAGCAGCAACAACAACAGCAACAAGTACAACAGCAACAACAACAGCAGCAACAACAacaacagcagcagcagcagcagcagcaacAGCAACAACAACAGCAACAGCAACAGCAGCAGCAACAACAGCAGACAACTGTAATAAAGCAAGATGATTTCAAACCACAAATAGTTCAGGTTATTGGTGCTGATGGTCAAATACTAACAGAAAAAACATCTCCAGGATATGCATGTCCAGAGTGTGGGTCATGTTTCAACACAAAGGTTTGTAAATTCTATTAA
Protein Sequence: MCMPTPSNVSGFGYSWGFTSSADLTKCEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVAVAVSNSAAQVTRVVGTPVTARRMFVVNEAPAHTLNRVTQQNQTATIQTTNLASKPFLTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGSLKTITEVAQSQADTIQTSTIHQHLLHTKQEPGTTNNSPKAMFSQTELLNTAVLMTSAPPAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYKCQECKMAFTLKHHLVTHLRVHSRGRPFMCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGENFAQKDHLVMHSRFHGSLSPFVCPDCGAAFARKFQLVQHGRAHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACFECGEAFKSKSELQQHCKMTRHCLNTPQTQQQQTQQQQQVQQQQQQQQQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQILTEKTSPGYACPECGSCFNTKVCKFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00923043; iTF_01130211; iTF_01496753; iTF_00856040; iTF_01280724;
90% Identity: iTF_01496753;
80% Identity: -