Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000010.1:43770827-43786044[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.05 16 8.4 0.2 2 23 52 74 51 74 0.92

2 16 0.033 11 9.0 0.4 3 23 305 326 304 326 0.97

3 16 0.0086 2.8 10.8 0.2 1 20 334 353 334 355 0.93

4 16 0.0068 2.2 11.1 0.5 2 23 365 386 364 386 0.94

5 16 1 3.3e+02 4.3 1.0 1 23 402 425 402 425 0.85

6 16 0.0062 2 11.3 3.6 1 23 434 457 434 457 0.94

7 16 0.1 34 7.4 0.3 3 22 534 553 532 555 0.82

8 16 1.4e-05 0.0047 19.6 1.6 1 23 589 611 589 611 0.97

9 16 1.2e-06 0.00039 22.9 1.7 1 23 618 640 618 640 0.98

10 16 6.7e-05 0.022 17.4 2.3 1 23 645 667 645 667 0.96

11 16 9e-05 0.029 17.1 2.4 1 23 673 695 673 695 0.99

12 16 1.6e-06 0.00051 22.6 1.2 1 23 701 723 701 723 0.97

13 16 0.00011 0.037 16.7 1.0 2 23 730 751 730 751 0.98

14 16 0.00091 0.3 13.9 0.8 2 23 759 781 758 781 0.97

15 16 0.0097 3.2 10.6 2.2 1 23 786 808 786 808 0.96

16 16 4.6 1.5e+03 2.2 7.8 1 23 814 837 814 837 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.05	16	8.4	0.2	2	23	52	74	51	74	0.92
2	16	0.033	11	9.0	0.4	3	23	305	326	304	326	0.97
3	16	0.0086	2.8	10.8	0.2	1	20	334	353	334	355	0.93
4	16	0.0068	2.2	11.1	0.5	2	23	365	386	364	386	0.94
5	16	1	3.3e+02	4.3	1.0	1	23	402	425	402	425	0.85
6	16	0.0062	2	11.3	3.6	1	23	434	457	434	457	0.94
7	16	0.1	34	7.4	0.3	3	22	534	553	532	555	0.82
8	16	1.4e-05	0.0047	19.6	1.6	1	23	589	611	589	611	0.97
9	16	1.2e-06	0.00039	22.9	1.7	1	23	618	640	618	640	0.98
10	16	6.7e-05	0.022	17.4	2.3	1	23	645	667	645	667	0.96
11	16	9e-05	0.029	17.1	2.4	1	23	673	695	673	695	0.99
12	16	1.6e-06	0.00051	22.6	1.2	1	23	701	723	701	723	0.97
13	16	0.00011	0.037	16.7	1.0	2	23	730	751	730	751	0.98
14	16	0.00091	0.3	13.9	0.8	2	23	759	781	758	781	0.97
15	16	0.0097	3.2	10.6	2.2	1	23	786	808	786	808	0.96
16	16	4.6	1.5e+03	2.2	7.8	1	23	814	837	814	837	0.96

Sequence Information

Coding Sequence: ATGTGTCTTGAACGGTTTGGAAATAAGTGGCGAATATGGAAGAATCCAACTGTTGTCGACCACGAAATCCATTCTTTTCACTTTAcaattaggggatattttGTGCCAGATAGAGAAGCTTGGTATGAACATGTCAAGTTTCATGTACCATGGCCTTGTTCACAATGCGTCGCAAACTTTCCCAACCAAATAACATTGCGTCATCATCTTAGCGCTGTTCACAAACTTGTCCACTGTCGTCTTTGTCACTTTCGTGTTACTGATGATGATCAATACAatacacatttatttaataaacataatGTGACAAATGTAATCGGTAAAAATGAAGAAGTTTTATGGGATTTCGATTACGAGGGCACCACACAATTTCTATGTCTACTCTGTTCTAAATCCGACAACCTCCTTTCGACATTTTTCAAGCATTACATGGGATATCATCATTTTACTATTAAATGCTTAACTAGTATTATTTCTGGTAGAGATCCACCATTCACTATTAATGGTGCAGATGTTAGTTCTCACTTCATTGATGGGCAGTTACAAGGCCAAATTCGGTATGGCTATGTTGATTTGGGTAAGAGACCTTTTGAAATTCTCCATGCATCAAAAGATGGCAATAATGCTTATAGTTActtaaaaacagaaataaaactAGAAACAAAAAACGACTCAGAAAGTAACAAGGAAGACAATACTAAGAAAGATAGTAAAGTTAAATATGAAAATATCCATAAAAATTATACAGGTGATGAAGATTTTGATGTTACCTTGACTGAACTCATTGTACTTGAAAAATGTTATTTTGATTATGTTACTCGAACTTTAAATGACATTAACTGCAATCAAATGCCTGAGAATTCTTTCATACCATATGAAGATGGAAAATCTGATATTATTATGGATGTTGACTGTCCATTATGTAAATCGAGGTACGAAAATGCTCAGGCTTTTACTATGCACATGAACAAAATGCATTGTGTAAAGTTAGTGCCTTTGTATTCATGCAGAGTTTGTGCTACAACATTTGACACTCAAAGTGAACTGGACACTCATACGTCCATGGAACTGGGCGATTtcgatgacttatggatctgtcAGTTTTGTGACAAAGAGTTTGATAATAGAGAAGCTACAAGGAAACACCTAACAGAGCACTGGGACATAATGGAGTATGACAATTGTTTCAGCCCACACTTGGGTTTCAAATGTAAATATTGTCCTACATTGTTTTGGAATGAAACAGATCGTGAACAACACCAAGTCAGAACACATTTTACAAACTATATAGACCAATTCTATAAATGTGAGAGTTGTTCGGAGACTTTCAGTGACAAGgTGTGGTTTATACATCACCACTTAGAGAAACATTTTGAAGGCAAAATTACTACTTACTTATtgaaatgttgcctgtgttgcaTAATTTTACCAAATGTAGAAGAAATGAGGAATCATTTCAGTGACGAGCATCCTGAAGCTCGCAAGGTGTATTGCTCATTGGATTCATGTCAATACAAGCCCCTTAGTCATATGAAATCATTTAAGCTGCATGTTAAGACGGTCCACAATCCGTCTGTGCGCGCGAAGAAGGCGGTTAATTGCACGGTGTGCGGCCGTGAGTTCAATACTTCGCGTGCGTGTGCCGCTCACGTGGCACAAGTGCACGGGCCTGGCAAGTTCAAGTGCAAGCTTTGCAGGGACGTGCTGCATACTATCGACGAGAGGAAACTACACTATCTACTGCGGCACCCGGGCCGACATCCGTACGAGTGCTCGGAGTGTGGCAAGTCGTTCCAGTATAAGTCGTCGCTTTACATGCATCGACAGGACCATTTCCCCAATAAGCAGAGTTTTACCTGCAGTTACTGTGGAAAGGTGTTCAGGAAGAAGGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGCGGCCCTACACCTGCCCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCAACTCGCACGTCAGgACACATTCCAAAGAGACTTCATTTGCTTGCGTTTATTGCGGGCAAACATTCGTCCAAAAATCGAAGCTCACCTATCACATAAGGAAACACACTGGAGAGAATTTGGAGACTTGCCCAGTATGCTCGAAATTATTCACCAGTGCTTGCGCTTTACGTGAACACATGAAGATCCACGTCGCGAAGAAACAATTAGTAAAATGTCCCTTATGTGAGAAGCGGTACCAAGACGAGCGTTACATGCTGCGGCACCTGCGCACGACGCACACGGGTTCGCAGCACGCCTGCCCGCTGTGCCACAAGCTGCTCACCAGCGCGCCCGGTCTGCGCCACCACCTGCTCACGCACAGCGCCACCAACCTCTTCCACTGCAAATGCTGCAAGAAATCCTACGCCATCAAGAGGACTATGATAAAACATCTCCGCAGGCGTCATGGATTAAAAGGAACAGAGATCAATATAAAAGATTTCTTCAAAAAACTCGATCCACGAGAATGTCAACTGGGATTGGATGAGGAAATAATGACCAGTATTTTTGGGCCGCCGAAGAAAATAATGACCGATCTCCTAATAGGAGATTATGTGACTATCACTAATAAATTTAATAGTAACCAGAGAGGTAATCAGAGTACAGAGGGAGATGGAGAAGGCGAACAATCTACAGAAGAGATTGAATACAAATACAACGCAGAGAACAGCAACGGGAGCAACGCAGCCGAAACTAACAAAGAGATAGAAAATGTATGCATAAAACAAGAGCCCATGACGACGGAAATAGAATTGGAACCGACCGATTTTGTTAGTGTCAAAATTGAACCTTATGATGAAAACGATTCAAGctaa
Protein Sequence: MCLERFGNKWRIWKNPTVVDHEIHSFHFTIRGYFVPDREAWYEHVKFHVPWPCSQCVANFPNQITLRHHLSAVHKLVHCRLCHFRVTDDDQYNTHLFNKHNVTNVIGKNEEVLWDFDYEGTTQFLCLLCSKSDNLLSTFFKHYMGYHHFTIKCLTSIISGRDPPFTINGADVSSHFIDGQLQGQIRYGYVDLGKRPFEILHASKDGNNAYSYLKTEIKLETKNDSESNKEDNTKKDSKVKYENIHKNYTGDEDFDVTLTELIVLEKCYFDYVTRTLNDINCNQMPENSFIPYEDGKSDIIMDVDCPLCKSRYENAQAFTMHMNKMHCVKLVPLYSCRVCATTFDTQSELDTHTSMELGDFDDLWICQFCDKEFDNREATRKHLTEHWDIMEYDNCFSPHLGFKCKYCPTLFWNETDREQHQVRTHFTNYIDQFYKCESCSETFSDKVWFIHHHLEKHFEGKITTYLLKCCLCCIILPNVEEMRNHFSDEHPEARKVYCSLDSCQYKPLSHMKSFKLHVKTVHNPSVRAKKAVNCTVCGREFNTSRACAAHVAQVHGPGKFKCKLCRDVLHTIDERKLHYLLRHPGRHPYECSECGKSFQYKSSLYMHRQDHFPNKQSFTCSYCGKVFRKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYTCPHCPRTFADKGACNSHVRTHSKETSFACVYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSACALREHMKIHVAKKQLVKCPLCEKRYQDERYMLRHLRTTHTGSQHACPLCHKLLTSAPGLRHHLLTHSATNLFHCKCCKKSYAIKRTMIKHLRRRHGLKGTEINIKDFFKKLDPRECQLGLDEEIMTSIFGPPKKIMTDLLIGDYVTITNKFNSNQRGNQSTEGDGEGEQSTEEIEYKYNAENSNGSNAAETNKEIENVCIKQEPMTTEIELEPTDFVSVKIEPYDENDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155717;
90% Identity: -
80% Identity: -