Psmi071573.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000027.1:19376984-19378714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0078 2.5 11.0 0.2 3 23 2 22 1 22 0.97 2 16 7.2 2.3e+03 1.6 0.1 3 23 51 72 49 72 0.92 3 16 0.091 30 7.6 2.1 2 23 93 115 92 115 0.94 4 16 0.00024 0.076 15.7 2.4 3 23 122 143 121 143 0.98 5 16 0.0005 0.16 14.7 2.9 1 23 147 170 147 170 0.96 6 16 0.0031 1 12.2 1.4 2 23 173 195 172 195 0.96 7 16 3.4 1.1e+03 2.6 0.2 2 20 201 219 200 221 0.90 8 16 0.00026 0.084 15.6 3.4 1 23 272 295 272 295 0.94 9 16 0.11 37 7.3 0.5 2 23 323 345 322 345 0.95 10 16 4.3e-05 0.014 18.1 0.1 1 23 367 390 367 390 0.95 11 16 2.6e-05 0.0085 18.7 3.1 2 23 396 418 396 418 0.95 12 16 0.001 0.34 13.7 3.4 1 23 423 446 423 446 0.95 13 16 0.0036 1.2 12.0 1.0 2 23 452 474 451 474 0.94 14 16 4.9e-05 0.016 17.9 3.3 1 23 478 501 478 501 0.97 15 16 0.92 3e+02 4.4 1.8 2 23 508 529 507 529 0.93 16 16 0.01 3.2 10.6 1.8 1 23 535 557 535 557 0.96
Sequence Information
- Coding Sequence
- ATGTGCTTTTATTGCGGGGAAGATTTGCCAGGGTACGGTGAACTGAGAAAGCACACGAAAACGCACGGCTTTTGTTCTGAAACTGATCGAGCGATTAAACTTGTTAAAGCAGGCGATGTTGAAGTTAAAATCGATGTATCGAACATAGCTTGTAAATTATGCGAAGACACGTTTAACGAATTTGATGAAATAGTCGATCATTTGTATACTAAACATGGACTATCGTATGATAGAGAGGTGCGTTTAGAAATAACGAAATACCGGCTCGCAGATCTCAAATGCTTACTTTGTGATCAACAATTTAGTTACTTCAATAAATTGGTGATTCACGTAAATAACTGTCATCCGAACCAACGCTTGTTATGTCATGAATGCGATCAGAAATTTAATAAAAGACGGGACTTAGATGCACATATTAGATCAcgtcataaaaaaaattacacctgCTTAAAGTGCTCTGTCACGTTCAAATCTAATTCAGAGCTACACACTCACAAAATGAACGCGCACGCCTCCTCATGTAATATTTGTTTTAGACAGTTCTCTTCAGCAAACAAAAGATTAAAACATATGAAGGTAGATCATGTCTCTGATGCTTTACAGTGTGGATTTTGCCTTAAAGTTATGACTACAAGGCAGGGTTTCCTGCGACACGCAACAACTTGCACACGCACTATTGATGGTGTTAAAATATCCGAACCCATATTAGTAGGTGACGAAGAAAAGAAACCTACGGTTAAACAAATAAGAAATGATTTAGCGTGCATCCTGAATATGTCTACAGCTATCCCTTTTAAACATTACATGAGTAAATTTAGATGTTTCTATTGTTCAAAAGATTTCACGGATTGCGATGATCTAAAACAACACACTGTTATGGAGCATCCTTTCTGTGATATCAGATTAAAGTCTATGAAATTGCGAAATAGGGAAGAGGGTCGTATTAAAATTGATACGTCCAAACTCTCCTGCAAAGTTTGCTATGAATCAATGCCtaatttaaatcatttaatagACCATCTAACAACAGAACACAAAGCTGATATAGATAAAACTATCGATATCCAGTTGCAGCCGTACAAACTTACGAAGGACAACTTTGCCTGTCCTATTTGCGGGAAAGTTTATAGATATTTCGCGATGCTGTTGAAACATGTTAGTGTTACACATACGGACAACAAAAACGTCTGTGCTTATTGCGGTAAATGCTTTAGATCTCACCCAAATCTTCGTGCTCACGTATCGCGGCGACATAGAGCCGCGGCGTTTAGATGCGAGCATTGCAACTCGGAATTTATATCTAATAATCACCTGCGAACACATTTGGGCAAAGCACACGGCGCCAAAATTGTGCAATGTCTGGAGTGCAAAGCGAGATTCACGTCGCGCTATTTCATGCAGAGGCATTTGATCAACTCGCATAGATCTGGTCATAAGTGTTCTTACTgcggcaaattatttattaggaATTCGTTCATGGTTAATCATATAAGGCGGACGCATTTTAAGGAGAAGAATGTCGAATGTTCTTTGTGCTGCGAAAGGTTTTTTGATGCGCAGCGCCTAAAAATGCATATGGTGAAACATTATGGGGAAAGAAATTTTCATTGCGATGTTTGTGGAAAGAAatttctttggaagaaaaacctGAAAGGTCACATGATATCACACTTTAAAAACCCTAACAACCAAACGAGATTTTACGACGAATTGAATAAGGCAATAAAATAA
- Protein Sequence
- MCFYCGEDLPGYGELRKHTKTHGFCSETDRAIKLVKAGDVEVKIDVSNIACKLCEDTFNEFDEIVDHLYTKHGLSYDREVRLEITKYRLADLKCLLCDQQFSYFNKLVIHVNNCHPNQRLLCHECDQKFNKRRDLDAHIRSRHKKNYTCLKCSVTFKSNSELHTHKMNAHASSCNICFRQFSSANKRLKHMKVDHVSDALQCGFCLKVMTTRQGFLRHATTCTRTIDGVKISEPILVGDEEKKPTVKQIRNDLACILNMSTAIPFKHYMSKFRCFYCSKDFTDCDDLKQHTVMEHPFCDIRLKSMKLRNREEGRIKIDTSKLSCKVCYESMPNLNHLIDHLTTEHKADIDKTIDIQLQPYKLTKDNFACPICGKVYRYFAMLLKHVSVTHTDNKNVCAYCGKCFRSHPNLRAHVSRRHRAAAFRCEHCNSEFISNNHLRTHLGKAHGAKIVQCLECKARFTSRYFMQRHLINSHRSGHKCSYCGKLFIRNSFMVNHIRRTHFKEKNVECSLCCERFFDAQRLKMHMVKHYGERNFHCDVCGKKFLWKKNLKGHMISHFKNPNNQTRFYDELNKAIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -