Psmi071547.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000027.1:19044839-19051065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 3.6e+02 4.2 1.1 1 23 104 127 104 127 0.89 2 19 0.035 12 8.9 0.2 2 23 154 176 153 176 0.95 3 19 1.4 4.7e+02 3.8 5.8 2 23 199 220 198 220 0.96 4 19 0.092 30 7.6 0.9 1 19 224 242 224 246 0.87 5 19 0.01 3.4 10.6 0.7 1 23 251 274 251 274 0.95 6 19 0.013 4.4 10.2 1.5 1 23 280 303 280 303 0.95 7 19 0.006 2 11.3 0.6 2 23 311 333 310 333 0.96 8 19 0.00076 0.25 14.1 2.5 1 23 339 361 339 361 0.97 9 19 9.1e-05 0.029 17.0 0.8 1 23 367 390 367 390 0.98 10 19 3.1 1e+03 2.8 1.4 1 7 396 402 396 404 0.91 11 19 0.00069 0.22 14.3 0.3 3 23 467 488 465 488 0.91 12 19 0.00014 0.046 16.4 0.4 2 23 559 580 558 580 0.97 13 19 0.00099 0.32 13.8 0.0 1 23 584 606 584 606 0.98 14 19 0.02 6.4 9.7 7.1 1 23 611 634 611 634 0.94 15 19 3.3 1.1e+03 2.7 0.4 2 23 642 664 641 664 0.78 16 19 0.00074 0.24 14.2 1.8 2 23 672 694 671 694 0.96 17 19 0.0013 0.43 13.4 5.8 1 23 700 722 700 722 0.96 18 19 3.8e-06 0.0012 21.4 2.4 1 23 728 750 728 750 0.98 19 19 0.00017 0.054 16.2 4.4 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- ATGCTTTACGGTAGTGGATTTTCTCACGCCGGTACTATCCGGAAAAATAACTTAAAGGGTTTACCGCGTACCAAAATCACTAAGCTCATAAGTCGGACTGAATCTGAATCAAAATTCGCGGACGAGAAGAGCGAGTGCAAAAAATCTTGTAGAAAAAGGAAATCATTAGATGCTAAGAAAAATTCTAAAATGGAACCTGGTGAACCCCGAACAAAACACGGTGAAGAATTAGAAAAACATCGTACGAACGTGAGAGAAATATTGTTATGGTCTAATGCTACTCCAATCAGATGTAGAGGTGGCATTGGTTACGCTTGCTGCTTCTGTACTGATCAATATCCAAACCCAAATGATTTGAAAAGACATTCCTTAGAGGAACACGATAGCGTTGTTATATCCACGTTTATGAAAGGGAGAGATATGCACGGATACTTCGTTAAGCTAGACATAACGGCACTAACTTGCAAAATTTGTAATTCATCCATCGACACATTGGAACAATTGATGGAACATCTAAAGAACGTGCACAATAAAAATGTTGATCTGAGTATAAAAAATCACATGATACCGTTCAAGTTTGAAACAGAGAATCTTCGTTGCTGCATTTGCTTGAACGTTTTCCACAAATTCCATGCACTGCAGGTCCACATGAACAACCATTGCAGGAATTACATCTGCGATATCTGCGATGCGGGATTTGTGAATAGACATATGCTGCGATGCCACAGTGACGGGCACAAGGTAGGGACTTTCGCCTGCGAACAGTGCTCCAAAGTGTTTAAAACAATTCGCATGAAGAAACTGCACGAACGGATTGTCCATAATTCAAATATGCCGCACAAATGTGGCTACTGCAGCGAACGGTTCAAGGAGAACTGGAATAAGAATGAACATCTGGCTAGAGTACACGGAGTACGCGGCCCTGGAGTGAAATGCCAAGCCTGCGATAAAACATTCGGCACTCAGCAGAGATGGTTGCTTCACATGAAACGAGATCACTTAATGCAAAGGCAGCACAAGTGCAATAGATGTGAGAAAGCGTTTTATGCGAAACGTGAACTGACGGATCATATGGTGAAACACACGGGTTTGAGAGAGTTTAGATGCGAAGTCTGTGCCAAAACGTATGGACGACTAAAAACATTGAAGGAACACATACGGAGGTTGCATCCGGACGACGAGAGATTCAAGTGCCACCATTGTGGTGTGGGAAGAGTAATCAAAATAGAAACAAGGCATACAAAACCGGTGGAATTGAAGTTTATATCAAAAAGTAAGACAACAGTGAGAAGTAACAGTGACCTCTCTGAGGCGAAGAAAAACCAACACAATTTGAGCATCATCCTACTGAATTCGAACGCGAATCCAATCCGATGCAAAGACAGCTTTGGATATGGCTGCGCTTTCTGTCCGAAACAATTCCCACAGCCGACTAATTTAAAGAAACACTTCTTAGAAGAACACAATAGTGATAGACTCATCAAATATATGTCGAGTAAGCTTTTTGAAAATGTTGTGAAACTCGACATCACGTACTTGTGCTGTGCGCTCTGTGATTCGGATTTCTTACAACTCGATGATTTCGTTCACCATTTAAAAAACGGACACGACAAAGACCTTTACATTGATATCAAAAGTCAAATTCTGCCCTTCAGGTTCGATACGCAGGAACTAAAATGCGCTATTTGTTCAACTGAATTTGCTACATTCAAACTGTTACAGGAACACATGAATACACATTTTAGGAATTATCCCTGCGAAATATGTGGAGGAAGCTACGTGACGGAAAGACTACTGCAAGGCCATGTTAAGCGTCACGGCAATGGCGAATACAAATGCACCCAATGCGATAAAACTTTCACAAGCGAACACAAGCGACGCGAGCACGAGCACAGAACCCACCTTGGGTTTAACAAGCGAAATAAATGCCAGGTTTGCAACGAGAGGTTCCTTGATTACTGGAAGAAAATCGATCACATGGTGAAAGTACACGGTGCGCCACCAGTTGTACTCAAATGTCAAGCCTGCGAGCGAACTTTTAACAATCAGAGGGCTTTGTCGAGACACAAGAAGAAGGACcatttactggaaaggaggcacaaCTGTTCGGAGTGCGAGATGAAATTTTTCAGCAGTAGCTGTTTGCAAAAGCACATGGCAAAGCACACGGGGCTGAGGGAATATATGTGCGACGTGTGCCACAAGTCATATGGCAGGAAGAACACCTTGAGAGAGCACATGCGGATTCATGCTGATGATCGTCGTTTTAAATGCGAACATTGCGGTCAAGGATTTGTGCAGAAATGTAGCTGGCGCGGCCATATGCGCTCTAAACATGGCGAGAACGTTTAA
- Protein Sequence
- MLYGSGFSHAGTIRKNNLKGLPRTKITKLISRTESESKFADEKSECKKSCRKRKSLDAKKNSKMEPGEPRTKHGEELEKHRTNVREILLWSNATPIRCRGGIGYACCFCTDQYPNPNDLKRHSLEEHDSVVISTFMKGRDMHGYFVKLDITALTCKICNSSIDTLEQLMEHLKNVHNKNVDLSIKNHMIPFKFETENLRCCICLNVFHKFHALQVHMNNHCRNYICDICDAGFVNRHMLRCHSDGHKVGTFACEQCSKVFKTIRMKKLHERIVHNSNMPHKCGYCSERFKENWNKNEHLARVHGVRGPGVKCQACDKTFGTQQRWLLHMKRDHLMQRQHKCNRCEKAFYAKRELTDHMVKHTGLREFRCEVCAKTYGRLKTLKEHIRRLHPDDERFKCHHCGVGRVIKIETRHTKPVELKFISKSKTTVRSNSDLSEAKKNQHNLSIILLNSNANPIRCKDSFGYGCAFCPKQFPQPTNLKKHFLEEHNSDRLIKYMSSKLFENVVKLDITYLCCALCDSDFLQLDDFVHHLKNGHDKDLYIDIKSQILPFRFDTQELKCAICSTEFATFKLLQEHMNTHFRNYPCEICGGSYVTERLLQGHVKRHGNGEYKCTQCDKTFTSEHKRREHEHRTHLGFNKRNKCQVCNERFLDYWKKIDHMVKVHGAPPVVLKCQACERTFNNQRALSRHKKKDHLLERRHNCSECEMKFFSSSCLQKHMAKHTGLREYMCDVCHKSYGRKNTLREHMRIHADDRRFKCEHCGQGFVQKCSWRGHMRSKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -