Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000005.1:20662093-20663187[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.5e-06 0.0021 20.6 0.3 1 23 22 44 22 44 0.98

2 8 1.3e-05 0.0044 19.6 2.7 1 23 51 73 51 73 0.98

3 8 1.9e-07 6e-05 25.5 2.3 1 23 79 101 79 101 0.98

4 8 1.2e-05 0.0038 19.9 1.4 1 23 107 129 107 129 0.99

5 8 8.5e-07 0.00028 23.4 3.9 1 23 135 157 135 157 0.97

6 8 5.4e-05 0.018 17.7 1.1 1 23 163 187 163 187 0.99

7 8 0.081 26 7.8 2.3 1 23 193 215 193 215 0.96

8 8 4.9e-05 0.016 17.9 0.7 1 23 221 244 221 244 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.5e-06	0.0021	20.6	0.3	1	23	22	44	22	44	0.98
2	8	1.3e-05	0.0044	19.6	2.7	1	23	51	73	51	73	0.98
3	8	1.9e-07	6e-05	25.5	2.3	1	23	79	101	79	101	0.98
4	8	1.2e-05	0.0038	19.9	1.4	1	23	107	129	107	129	0.99
5	8	8.5e-07	0.00028	23.4	3.9	1	23	135	157	135	157	0.97
6	8	5.4e-05	0.018	17.7	1.1	1	23	163	187	163	187	0.99
7	8	0.081	26	7.8	2.3	1	23	193	215	193	215	0.96
8	8	4.9e-05	0.016	17.9	0.7	1	23	221	244	221	244	0.97

Sequence Information

Coding Sequence: ATGAATTACACAACATCTCTTGACATTAAACTAAATCCTTTGGCAGGTGAGGAAGAGCGCGTACACCAATGTGGAGAATGTGGTCTGACGCTTTCCACTCGCAGCGCGTTAACAGCTCACGCCCGCTCGCACCGCGTAGCCGCTGATGCTCATCGTTGCGATGTCTGCCACAAGACTTTCGCAGTACCGGCACGACTTGTTCGTCATTATCGGACACACACCGGCGAACGACCCTTTGAATGTGAATACTGTCATAAAATGTTCAGTGTAAAAGAGAATTTGCAAGTGCATCGCCGAATCCACACCAAGGAGCGCCCGTACCGGTGCAGCGTTTGTGGCGCTGCCTTCGAGCACTCGGGAAAACTACATCGCCATGCTCGAATTCACACCGGTGAAAGGCCACACGCATGTCCACATTGCCATAAAACATTTATTCAATCAGGGCAGTTGGTGATCCATTTGAGAACACACACCGGCGAGAAACCTTACCGCTGTCCAGCACCTGGCTGCGGTAAAGGCTTTACATGTTCCAAGCAGCTCAAAGTGCATTCTCGTACTCATACCGGAGAGCGACCCTACACATGCGATATATGCCTTCGTGACTTTGGATATAACCACGTGCTGAAACTACATCGCTTTCAACATTATGGCGAACGCTGTTATCGATGCACAGTGTGTGATGGCACATTTAACACCAAAAAGCAAATGGAAGCTCATATTTACAAAGAACATGGCGCGGAAACCCCTCGAGCGCCGTCATCTCTTTCCACAATGTCCAGTGGGAACGGAAATGCTATGTGTGATATTGTTGAAGCGGCTTTACAACAATTGCCACCGACGCCTCCAAGCTCTCCACCATCTCCGCCATGCCCCACTGTTCCGACGACGTCTATTGCGTCAACGTCTCCTACACCCATGCCAAACCCATCCCCTTCACCTCCTACGACCAGTCTACATTTTACTCTCGCTCCTTCCTCCCTGCCGCCTAGAAAGCGTAAGTTTATTCCATATGTCGATTCCCTACCCACACCCGTTCCAGTGGTACGCCATACTTCAGTGATACAGTTTGCTCCCCCCGCTGCTGATTCATCGTAG
Protein Sequence: MNYTTSLDIKLNPLAGEEERVHQCGECGLTLSTRSALTAHARSHRVAADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERPYRCSVCGAAFEHSGKLHRHARIHTGERPHACPHCHKTFIQSGQLVIHLRTHTGEKPYRCPAPGCGKGFTCSKQLKVHSRTHTGERPYTCDICLRDFGYNHVLKLHRFQHYGERCYRCTVCDGTFNTKKQMEAHIYKEHGAETPRAPSSLSTMSSGNGNAMCDIVEAALQQLPPTPPSSPPSPPCPTVPTTSIASTSPTPMPNPSPSPPTTSLHFTLAPSSLPPRKRKFIPYVDSLPTPVPVVRHTSVIQFAPPAADSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01153201;
90% Identity: iTF_01155706;
80% Identity: -