Psmi034846.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000012.1:46069245-46071150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.63 2e+02 4.9 0.7 3 23 56 75 55 75 0.95 2 13 7e-07 0.00023 23.7 1.0 1 23 81 104 81 104 0.96 3 13 1.9e-06 0.00061 22.3 7.2 1 23 110 132 110 132 0.98 4 13 0.00029 0.094 15.5 0.1 1 23 138 160 138 160 0.98 5 13 5.1e-05 0.017 17.8 0.9 1 23 166 188 166 188 0.98 6 13 4.2e-05 0.014 18.1 1.0 5 23 197 215 195 215 0.96 7 13 0.14 46 7.0 2.8 1 23 274 295 274 295 0.97 8 13 0.00092 0.3 13.9 0.5 2 23 444 466 444 466 0.96 9 13 7.6e-05 0.025 17.3 0.1 1 23 472 494 472 494 0.97 10 13 3.6e-05 0.012 18.3 0.6 2 23 501 522 500 522 0.96 11 13 0.00083 0.27 14.0 3.3 3 23 530 550 528 550 0.97 12 13 0.013 4.1 10.3 5.3 1 23 556 578 556 578 0.97 13 13 1.7e-05 0.0055 19.3 1.3 1 23 583 606 583 606 0.97
Sequence Information
- Coding Sequence
- ATGCATTTACTTTTCAGTTCCATATTAAATGAATGTGAAGTGAAAGTGGAAAGATCAAGCGAGTTCGAAAGTGATAGCACACACATAGAAAAGCAAAAAGATATAACAGAAACCATAAACAAATCGCTTACAATAGTAAACGAAGATGGTAAAAAATACGCGCACTGCGGCATTTGCGAGAAAAATGTTTCAGTTGGCTCCTGGAAAAGGCATGTGCGGTCGCACGTAGGCGAGAAAAGATATAGTTGTCACACTTGTGGGCTATCGTTTAATGACAGCGGTAACCTGGCTCGTCATAGAAGAGCCTTACACGCTAAACACCGACCGTTTTCTTGTCACATCTGCCATAAAGCCTTCACTAGAAGCAGCCACCTTCAAGACCATGTAAAATCCCATTCAGAAAGCCGTGACTATGTCTGTGACATTTGTGGAAAAGCATCCAAGTCCGGAGCGGCTTTACGAATGCACAAAAAGATTCACGAAGATAAATTCAAATTCCAGTGCATGGAGTGCAATTCCAAATTCAAACGACGCGGTGAACTGAAAGCACATTTGACTATCCACACAGGAGAAAAGGCTCATTCGTGCTGGTGCGGCAAATCTTTTCGTCTTCGAAGTCAACTCACCATTCACATCAAAACACATgacatattGTTCAAGGATCTGAACGAGTTCGTTGCGCAGACTATGGGTAGCACGCAATATGCCAACAGTTCCAACAGTCTATCAAAACTCGGCAAAACTTGCGAGTATTGTGGCATAAAACAATCGGATGACCTTTATACGGATCACTTGATCACCATGCATTCGGAATCACTATTCCATTGTAATGAGTGCGACACATATTTGGACAGAAAAAACTTCATTCTTCACATGTCTATGCATGTTCAGTACGTAGCTAATAGTGACAAAAAGGAAGCTCTGAAAAAACTGAGAAAAAGGAAAAGCAACAAAGATACCGAATATGCAGTGATTACTACCCTGAAATCAAATCCATCTCAGAACAAGGAAACTGTAGAAAAGACAATCAAGAATTGTCCAAGAGAAAATAGCAACAATGACGCGCCAGAAAACGAATTTTCGGACCACAGTGATGTAGAATACTTTGGACGTCTACCCGAATCAGTGTTCGAAGCTATTGAAGACTCACAAGATAGCCAATGCGATAATGATCCGGACCTACCGCAGACTTCAGAAAATAATGAACTAAACGAAAATAACGATAACAGTGACATATCTAACGAATGTATTAAAATTTCTAAAGATTTAACTCCAACTGCTCGACCTCCATCAGATAGTAAAACTGAAAAAAGACACAAAAAAACACGGACTTGTCCCATTTGCTCAAAAGTGTACACAGCGTCATCTAGCTACTTTTATCATTTGAAAAATTCTCACCAACAAAGTAAGGACTACGAGTGCGACGTATGCGGTAAAAGGCTaggaaataaaagtagtttagcGCAGCACGCCTCCATACACGTGAGTGAGCGTCGCTTGGAGTGTAGGCAGTGCGGAAAAAAATTCCGTTCAAAAGCCAGTTTGTACATCCACGAGCAAATTCACATCAACATGAAGACTTGGGCCTGTAACCAATGCAACAGATCGTTTAGGTGGCGTACGCACTTGTTAAGACACTTAAAACGCCATTCAGCTGAGAAATCGCATATTTGCACGTCATGTGGGCGGGGCTTTAAAATCCATTGTGACTTGTTGCGACACGCCCGCACTCACACCGCTGGTAATTTTAGTTGCGAAAAATGCGACGTCAAATTTGCGCAACAGAGATATTTAAAAGTGCATATGATCAAGAAACATTCCAATAAAATAACTGGAAATGAATCTCAAAACTAG
- Protein Sequence
- MHLLFSSILNECEVKVERSSEFESDSTHIEKQKDITETINKSLTIVNEDGKKYAHCGICEKNVSVGSWKRHVRSHVGEKRYSCHTCGLSFNDSGNLARHRRALHAKHRPFSCHICHKAFTRSSHLQDHVKSHSESRDYVCDICGKASKSGAALRMHKKIHEDKFKFQCMECNSKFKRRGELKAHLTIHTGEKAHSCWCGKSFRLRSQLTIHIKTHDILFKDLNEFVAQTMGSTQYANSSNSLSKLGKTCEYCGIKQSDDLYTDHLITMHSESLFHCNECDTYLDRKNFILHMSMHVQYVANSDKKEALKKLRKRKSNKDTEYAVITTLKSNPSQNKETVEKTIKNCPRENSNNDAPENEFSDHSDVEYFGRLPESVFEAIEDSQDSQCDNDPDLPQTSENNELNENNDNSDISNECIKISKDLTPTARPPSDSKTEKRHKKTRTCPICSKVYTASSSYFYHLKNSHQQSKDYECDVCGKRLGNKSSLAQHASIHVSERRLECRQCGKKFRSKASLYIHEQIHINMKTWACNQCNRSFRWRTHLLRHLKRHSAEKSHICTSCGRGFKIHCDLLRHARTHTAGNFSCEKCDVKFAQQRYLKVHMIKKHSNKITGNESQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158130;
- 90% Identity
- iTF_01158130;
- 80% Identity
- -