Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000004.1:21066973-21091110[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.9e-05 0.019 17.6 6.7 1 23 431 453 431 453 0.97

2 12 8.5e-05 0.028 17.1 6.5 1 23 459 481 459 481 0.97

3 12 2.9e-07 9.3e-05 24.9 1.9 1 23 487 509 487 509 0.98

4 12 7.7e-06 0.0025 20.4 6.3 1 23 515 537 515 537 0.96

5 12 4.6e-06 0.0015 21.1 6.6 1 23 543 565 543 565 0.98

6 12 5.6e-06 0.0018 20.8 6.4 1 23 571 593 571 593 0.97

7 12 7.1e-06 0.0023 20.5 5.8 1 23 599 621 599 621 0.98

8 12 8.2e-06 0.0027 20.3 7.2 1 23 627 649 627 649 0.97

9 12 3.4e-06 0.0011 21.5 4.3 1 23 655 677 655 677 0.97

10 12 0.00032 0.1 15.3 0.3 1 23 684 706 684 706 0.96

11 12 0.0013 0.43 13.4 5.0 1 23 715 737 715 737 0.99

12 12 6 2e+03 1.9 0.3 2 11 755 764 755 770 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.9e-05	0.019	17.6	6.7	1	23	431	453	431	453	0.97
2	12	8.5e-05	0.028	17.1	6.5	1	23	459	481	459	481	0.97
3	12	2.9e-07	9.3e-05	24.9	1.9	1	23	487	509	487	509	0.98
4	12	7.7e-06	0.0025	20.4	6.3	1	23	515	537	515	537	0.96
5	12	4.6e-06	0.0015	21.1	6.6	1	23	543	565	543	565	0.98
6	12	5.6e-06	0.0018	20.8	6.4	1	23	571	593	571	593	0.97
7	12	7.1e-06	0.0023	20.5	5.8	1	23	599	621	599	621	0.98
8	12	8.2e-06	0.0027	20.3	7.2	1	23	627	649	627	649	0.97
9	12	3.4e-06	0.0011	21.5	4.3	1	23	655	677	655	677	0.97
10	12	0.00032	0.1	15.3	0.3	1	23	684	706	684	706	0.96
11	12	0.0013	0.43	13.4	5.0	1	23	715	737	715	737	0.99
12	12	6	2e+03	1.9	0.3	2	11	755	764	755	770	0.84

Sequence Information

Coding Sequence: ATGGGTCCGCCAATACCACGACaaGGCGACAAGGAAAGTATGGAACACAAATATGATATgaacattaataaattagtagCAGAGGCTACAGGAGTGTCTGCCCGCACCGTAATGCGAATTGTAGCTGAAGGAAATTCGAGTCTACAAACATCGGAAATTGCAAAATTTTCATCTCCGCGGAaacctaaagaaataaaaaagagaatcCAGATTGATGATTTTGACATGGGAGTTATACGAAGAAAAATTCATCAATTTTATACTAGTGATAAGAAAATCCCAAGTATTCGTAAGCTGCTTGCAGTTTTAAAAGAAGATGGCATTGTGAACTGCGGTTGTACCTATTTACGACAGCTTTTACATAAGatgggatatttatttaaaaaatgtaaatctaaGAGACACATTTTAATTGAGAGGCCCAGTATTGCTGAATGGAGAGTAAGGTATTTAAGAGCTATACGGAAACATAGAAATGAAAACCGAAACATATATTATCTGGACGAAACCTACGTTAATAGTAGCCACACCTCCAATATGTGTTGGCAATCCGAATCTGAGCCTGGAATTTATGCTGATATTGGCAAAGGGCGTCGTTTGGTGATTGTTCATGGTGGTAGCCGAGACGGATTAGTTAACGGTGCCTTAACAATTTTCAAATCAGATTCGAAATGTGGGGATTACCATGGCGATATGAATGCCACAAATTTTCATAACTGGGTTAGtcacaaattgaaaaataaactagCTCCTAATTCAGTGGTCGTAATGGACAATGCCTCCTACCATTGTGTACAGGTAAAGAAAAAACCTACTATGTCAAGTTTAAAAAGGGACATGCAAGATTGGTTACGCGAACGTAATGTTGAATTTACACCAGATAATACAAAAGCCGAACTCTTTCATTTGATAAATAGAACTCAGTCCGAAAAAATTTACGTCATTGACGAAATATTAAAGGCTTCAGGTCATATCGTTCTTCGCCTTCCGCCATATCATCCTGATCTCAACCCCATTGAGCTTGTGTGGGCCGATATAAAGAACAATTTAGctacaaattatataaatacttcATTGGACGACAAAATTCCAATCATCACAAAATTGTTTTCTGAATTCACTCCGGGAAGATGGCAAAAGTGTGACGACCACGTACAGAAAATCGAGAACCAATATTGGGAACACGATATGAGGTTTGACAATGTAATAGACGAGTTGATCATAAACCTGGGAAACGATTCAGATTCTGAGGAGGATATGGAAATTGAAGACATGTATaGTGAAACACCGCACCGGTGTGATTTCTGTTCGAAGACGTTCACGCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGCGAGTCACCGCACCGCTGCAGCTTCTGCTCCAAGTCCTTCACTCGCCGAGAGCACCTCGTCAACCACGTCAGGCAGCACACAGGCGAAACGCCTTTCCAGTGTGGATACTGTCCTAAAGCGTTCACTAGAAAAGATCATTTAGTTAACCATGTTCGACAACACACTGGAGAATCACCTCACATATGTTCGTATTGTACGAAGTCTTTCACGCGCAAGGAACACTTGACTAATCATGTCCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCACTTATTGTGCTAAATCTTTCACAAGGAAAGAACATCTTACTAATCATATCAGACAACATACGGGTGAGACTCCGTTCAAATGTACATATTGTACGAAGGCGTTCTCGCGGAAGGAACATCTGACGAATCACATTCACCTTCACACAGGTGAAACACCACACAAGTGCCCCTTCTGCACCAAAACATATTCCAGGAAGGAACATTTGACCAACCATGTCAGAATACATACGGGTGAATCACCACATCGCTGTGAATTCTGTGATAAGACATTCACAAGGAAGGAACATCTTACCAACCATTTAAAACAGCACACTGGAGAGACGCCATTTCACTGCAAAGTCTGCTCCAAACCTTTCACAAGGAAGGAACACCTTGCAACGCATATGAGGGCGCATAGTTGCGGTGAACGGCCTTACAGTTGTGGAGAATGTGGCAAATCATTTCCACTGAAAGGAAACTTGTTATTCCATGAACGATCACATCAGAAGGGTGGCAGTGGAAGTAAATTTAGGTGTGAAGTTTGTTCAAAGCACTTCATTTGTAAAGGGAATTTAGTATCACATCAGCGCACTCATACGGCGGCGGGCGAAACTGTACCGAACAGTGAACAAGTCACAGAAGGCGAGCAATGTGGTGATTGTGATAAAGAGACCACTGAGCAGCCTGAACGTAAACATGATATCAGaacTACAAACGAAAATATTTCCACTGAAGAAGATGTAACACAAAACCAACAAAATAACGCTGTTATGCAAATAACTAGTCAGCTCAATTGA
Protein Sequence: MGPPIPRQGDKESMEHKYDMNINKLVAEATGVSARTVMRIVAEGNSSLQTSEIAKFSSPRKPKEIKKRIQIDDFDMGVIRRKIHQFYTSDKKIPSIRKLLAVLKEDGIVNCGCTYLRQLLHKMGYLFKKCKSKRHILIERPSIAEWRVRYLRAIRKHRNENRNIYYLDETYVNSSHTSNMCWQSESEPGIYADIGKGRRLVIVHGGSRDGLVNGALTIFKSDSKCGDYHGDMNATNFHNWVSHKLKNKLAPNSVVVMDNASYHCVQVKKKPTMSSLKRDMQDWLRERNVEFTPDNTKAELFHLINRTQSEKIYVIDEILKASGHIVLRLPPYHPDLNPIELVWADIKNNLATNYINTSLDDKIPIITKLFSEFTPGRWQKCDDHVQKIENQYWEHDMRFDNVIDELIINLGNDSDSEEDMEIEDMYSETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHICSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPFKCTYCTKAFSRKEHLTNHIHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEFCDKTFTRKEHLTNHLKQHTGETPFHCKVCSKPFTRKEHLATHMRAHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGGSGSKFRCEVCSKHFICKGNLVSHQRTHTAAGETVPNSEQVTEGEQCGDCDKETTEQPERKHDIRTTNENISTEEDVTQNQQNNAVMQITSQLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -