Psmi071468.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000027.1:18431931-18437703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0079 2.6 10.9 0.7 1 21 78 98 78 99 0.95 2 29 0.02 6.5 9.7 0.9 2 23 171 192 170 192 0.97 3 29 0.0061 2 11.3 0.2 1 23 196 218 196 218 0.95 4 29 0.13 42 7.1 1.5 1 21 223 243 223 246 0.74 5 29 0.011 3.6 10.5 1.8 1 23 252 275 252 275 0.95 6 29 0.00077 0.25 14.1 0.6 1 23 282 305 282 305 0.98 7 29 1.3e-06 0.00042 22.9 1.0 1 23 312 334 312 334 0.97 8 29 0.0012 0.38 13.6 0.2 1 23 408 431 408 431 0.95 9 29 0.0094 3.1 10.7 1.3 2 23 458 480 457 480 0.96 10 29 0.0017 0.55 13.0 1.6 1 23 502 524 502 524 0.98 11 29 0.00037 0.12 15.1 0.3 1 23 528 550 528 550 0.97 12 29 9.6 3.1e+03 1.2 0.6 1 23 555 578 555 578 0.76 13 29 0.18 58 6.7 0.1 1 21 584 604 584 607 0.87 14 29 0.0013 0.42 13.4 1.0 3 23 616 637 614 637 0.97 15 29 7 2.3e+03 1.7 0.3 1 23 700 722 700 722 0.89 16 29 0.0045 1.4 11.7 0.5 1 23 792 814 792 814 0.98 17 29 5.1e-05 0.017 17.8 2.9 1 23 818 840 818 840 0.98 18 29 0.0054 1.8 11.4 0.2 1 23 845 868 845 868 0.94 19 29 0.12 38 7.2 2.6 1 23 874 897 874 897 0.96 20 29 1.9 6.1e+02 3.5 0.2 1 23 945 967 945 967 0.94 21 29 0.88 2.9e+02 4.5 0.0 2 23 991 1013 990 1013 0.93 22 29 0.014 4.6 10.1 4.9 1 23 1035 1057 1035 1057 0.97 23 29 0.0019 0.61 12.9 2.3 3 23 1063 1083 1062 1083 0.97 24 29 0.14 46 7.0 1.8 1 23 1090 1113 1090 1113 0.95 25 29 0.17 56 6.7 0.7 1 23 1119 1142 1119 1142 0.94 26 29 0.063 21 8.1 1.5 1 23 1148 1171 1148 1171 0.96 27 29 0.014 4.6 10.1 0.8 1 23 1177 1199 1177 1199 0.98 28 29 1.1e-05 0.0036 19.9 2.7 1 23 1205 1227 1205 1227 0.99 29 29 8.7e-06 0.0028 20.2 3.9 1 23 1233 1255 1233 1256 0.96
Sequence Information
- Coding Sequence
- ATGCCTCGTTTGAATGTGAAAATACTAGGAGACCAGGGACAAATGGAAGATGAGAGTATTGTTAAGGTAGAAACCAATGATAATATACCATTAGGGGAGTCGATTAACCTTAAGGAAAAACGACGCTATATCAGGAGCGCACGAGCCGAAGCGAGGATTGTAACAAAGAGAAACGCCAAATCTCTGTTGGAATGTTGGTCCTTGTGCCCGTTTAGATGGCAACGGAACCGGTTTAAATGCGCATTCTGCGAGGAGAGCTTTATACAGTGCAATGATCTGAGGGAACATGTTAACGAGTGCTCGTCTAAGCATAACGTCAAGGATATTTACAGCAAATTCAAAGAAATGTCCCTCATCAACGTAGACATCACAGGTGCTTCGTGCCGTCTCTGTAGGTGCCCTTACTCCGGGATTAACCAAATGCGACAACATGCGGTCCAGCACGGATATGAGTTCAACACGTCTCAGCCGGACGGTGTCCTACCTTTCAGTCTCGACAAGGAGTGCTGGCGTTGTGTTATATGCCACGAAGATTTCAACAATTTTCTCAAGCTCTACGAGCACATGAATGTTCACTACCAACATTATATCTGCTCCACTTGTGGAAAAGGTTACATGACCGCGCCACGTCTGAGGAAACATTCCGAGGTCCACATAACAGGGTCGTTCCCATGCGATAAATGCGATAGGGCGTTCACGATGCGTGCAGCTAGGGACCATCATAAGGCTCACGCCCACGCGAAAGGTCCTCGATACGAATGCCCACATTGCAACATGCGTTTCAACGGGTACTATGACAGAATGAATCATTTGAACGAAACGCACAGAGAGAAGGAGGTATCTTATCGTTGTAACGTCTGTGAACTGACGTTCAAAACGAGCGGTAAACGCGCAATGCACGTAAGAACTGTACATTTGCCGCAGCCTCGTAACTTCGCTTGTCCGTATTGCGAATGGTTTTTCAAAACGAGCTACGAGCTGAAGAGGCACATGGTGAAGCACACGGGTTCCGCTAATGCGGAAGCGGTGGCAAACGTAGTTAAACGAGTTAGGAAGTTGAAAGAGAACGTAAGTGCGCGCCAAATGCGAAGACGGCGACGTGCCAACAACCAGCTACCGGAAGAGTCGGAGAGGCGTATCTCGAAAACAATGATGAGAAGGAACACCATGGCCATCTTAGAATGTTCCACTGCTTGGGCCTTTCGATGGTTTCGCAATGCCTTTTTCTGCTCCTATTGCGATGAAAAATTTGTCGATCCGCAGCCATTGCGTGAACACGTACTCTCATCCCACATCAGCTGTTCACCCACCGTGCGTATATTCTCGAAACTGACAGAGAACAATATGGTGAAAATTGACATCACCAATCTAAGGTGTAGGTTGTGTAACTATGGATGCAACAACATAGACGcacttaaaaatcatttaaaaactgCACATAGGAAAACACTTAATAGTGAATACAGCGATGGAGTTCTGCCATTCAAATTAGATGAGATCGGATTCTATTGTCAGGTGTGTTTTGAGTATTTCACTAGTTTCGCGAAGTTGAACGAACATATGAATTCGCACTATCAGAATTACATTTGTGACGCCTGCGGGAAGGCTTTCATTTCGAAGTCTAGGTTCAGGACTCACGTGGAGTCACACGAGATCGGGAGTTTCCCTTGCGGTGAATGCGACGAAGTATTACAGACGCGGGCGGCCCGTACGTGTCATAGAATGAAGGTGCACCGAAAAGGTATCCGGTACACGTGCCCTCGATGTCCTGCAGTGTTCACCGCGTATTACGCGAGAGCGAGGCACTTAGTAGACGGGCACGCGCAACAGAGGATggattatggttgtaccacgtgcGGTAAAACTTTCGAGACGAGTTGCAAACGGGCGGCGCACATCCGCGTAGCCCATATGCCTGTCGAGAAACGATACGAatttttatttttaggacAAGAAGAAATCACTCCGGATACATCagtaaaagaaaagttaaatataaaatggAAAAAGATACGCAGGGTTGCGGAAGACAAGGCTAACGCTGCTATTATCTTGCAGAATTCCAACGCTGTTGCTTTCAGATGGCATCGTGGAAGATTCATGTGTGCTTACTGCCCGCTCATTTGCCCAAGTGTCACAGAGATACGTCTGCATTCTAATGAACACGCTAACAAGCAAGACATCTTTCTGAATAGCGGAGTCCGCAATTCTTTCCCATTAAGAGTTGATGTCACGGATTTAACTTGTATGCTATGCTTTGACAGAATCGAAAATTTGGAAAATTTTAAGGTTCATCTGTCAAATAACCATGATAAATTCCTCAATCCCGATTATAGTGACGGCTTAGTGCCATTCGTGTTGACGGGTAAAGACTATAAATGCGTTAATTGTGGCACATTGTTCGAGAACTTCATGAGCCTATATATTCACATGAATGAACATTACCAGACCTACGTATGCTATACCTGTGGTAAAGGTTATTCCAGCAAACATAAGTTAAGCGCTCACCAAAAGTCCCACGAATCGGGTCAATTCGAATGTCCCAAATGCGACAGTGTGTTTTCAAACCGGGTGGCCAAATACAGACATGTGTCCATTGCTCACGGTCCCAAGGAGCGCTATCGGTGTCCAGTGTGTGGAGATCACTTTGATTCCTATCATTCCCGCTTGAGACATCTCGACAGAATACATGGACAGAAGGTTGAATACCAGTgGCCCAAGGAAAGCAATGTTAAATGGAAACCAAGACGGAAGTTTAACGATCACAGAGATAACGCTGCTATTATTCTCGAATGTTCCAACGCGTGCCCATTTAGATGGAAGAGCGGTGCGTTCGTCTGCGCATTCTGTCCGAACTCGTTCGGGGACTTTACGGGTGTCAGGGAACACACTTCAGAACACCCGAACAGGGTTGAAGCAGTACGCTTGGCGCGTCCCTTCGACACAATAAAAGCCGACATAACAAATCTCAGATGCGATCTATGTTTACAAATTGTAAAGGACTTAGATGAGCTCGCTGATCACTTAATCAATGGACACGAGAAACCTATTGTCAAAGACCGCGGTGTCGGCATCActcctttttatttgaaaggcaAAGAATTTATCTGTTCGCACTGCAGTGAACACTTCGATTTGTTCACTAATCTGAACACACACATGAAtcaacattataaaaataatatatgctATAAGTGCGGTAAAGCGTTCTCAGCCTCTCACAGACTGCATGCACACATGGTTACCCACGAACTGGAAGACGATGGGTTCAAATGCACTAAATGCGATGATATATTCGCCACTCGCAAACTCAGGAGTAGTCACATGTCCTATATGCACGGACCAAAGCTGAGATATAGGTGCCCGTATTGTAAAGATAAGTTTAAGGCGTACGGCGACAGAGCAAAACATTTAAAGGAAGTCCACGACAGGAAAGTTGAGTATCCTTGCCACTTATGTCCGGCTGTTTTTGCTCTATGTAATCAGAGAACGAAACATATCCAGCAAGTTCATATAAAACACAAACCGTTTCAATGCGAGTACTGTGTGTTTAAGTCCTCGACGGCGGCCCGGTTGAGGAGTCACATGGTCAAACATATAGGCATCAGGAAGTATCAATGTGACATTTGTAAAAAAGCCTATTGCAGGATCAAAACTCTGAGAGAGCACATGCGGATCCATAATAACGACAAGCGGTTCGTCTGCGAGTATTGCAACGCCGCGTTTGTGCAGAAATGCAGCTTGCAGAGTCACATGAGGACACATCATCCAATGGCCCCACCACTGAACAAGACAAAACAATCTGACTTCAATGCCTTTAAATAA
- Protein Sequence
- MPRLNVKILGDQGQMEDESIVKVETNDNIPLGESINLKEKRRYIRSARAEARIVTKRNAKSLLECWSLCPFRWQRNRFKCAFCEESFIQCNDLREHVNECSSKHNVKDIYSKFKEMSLINVDITGASCRLCRCPYSGINQMRQHAVQHGYEFNTSQPDGVLPFSLDKECWRCVICHEDFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHITGSFPCDKCDRAFTMRAARDHHKAHAHAKGPRYECPHCNMRFNGYYDRMNHLNETHREKEVSYRCNVCELTFKTSGKRAMHVRTVHLPQPRNFACPYCEWFFKTSYELKRHMVKHTGSANAEAVANVVKRVRKLKENVSARQMRRRRRANNQLPEESERRISKTMMRRNTMAILECSTAWAFRWFRNAFFCSYCDEKFVDPQPLREHVLSSHISCSPTVRIFSKLTENNMVKIDITNLRCRLCNYGCNNIDALKNHLKTAHRKTLNSEYSDGVLPFKLDEIGFYCQVCFEYFTSFAKLNEHMNSHYQNYICDACGKAFISKSRFRTHVESHEIGSFPCGECDEVLQTRAARTCHRMKVHRKGIRYTCPRCPAVFTAYYARARHLVDGHAQQRMDYGCTTCGKTFETSCKRAAHIRVAHMPVEKRYEFLFLGQEEITPDTSVKEKLNIKWKKIRRVAEDKANAAIILQNSNAVAFRWHRGRFMCAYCPLICPSVTEIRLHSNEHANKQDIFLNSGVRNSFPLRVDVTDLTCMLCFDRIENLENFKVHLSNNHDKFLNPDYSDGLVPFVLTGKDYKCVNCGTLFENFMSLYIHMNEHYQTYVCYTCGKGYSSKHKLSAHQKSHESGQFECPKCDSVFSNRVAKYRHVSIAHGPKERYRCPVCGDHFDSYHSRLRHLDRIHGQKVEYQWPKESNVKWKPRRKFNDHRDNAAIILECSNACPFRWKSGAFVCAFCPNSFGDFTGVREHTSEHPNRVEAVRLARPFDTIKADITNLRCDLCLQIVKDLDELADHLINGHEKPIVKDRGVGITPFYLKGKEFICSHCSEHFDLFTNLNTHMNQHYKNNICYKCGKAFSASHRLHAHMVTHELEDDGFKCTKCDDIFATRKLRSSHMSYMHGPKLRYRCPYCKDKFKAYGDRAKHLKEVHDRKVEYPCHLCPAVFALCNQRTKHIQQVHIKHKPFQCEYCVFKSSTAARLRSHMVKHIGIRKYQCDICKKAYCRIKTLREHMRIHNNDKRFVCEYCNAAFVQKCSLQSHMRTHHPMAPPLNKTKQSDFNAFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -