Psmi022744.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000008.1:26320200-26320700[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6 1.5e+03 1.2 0.0 31 43 9 22 8 24 0.88 2 2 3.9e-07 0.00011 24.1 0.1 6 40 17 51 15 55 0.83
Sequence Information
- Coding Sequence
- ATGAAAAGCTCCGCCGGTATTCATGCCACGCTTCACGCTTCACGCTTCAAGGAGGCTTATATGAAAGTTATAAAGGATAATTGGTCAGTGTACAAGGCGTCGAAGGAATATGGCATACCGTGGTCTACTTTGAGAAGACACATAGCTACTCATGGAGGTGAAAGTTTCGACTTACCTAAACTTGGGAGACCATTCACATTAGACAGCGACCTTGAATGTAAGTTTGTTTCCTAcataattaaaatgcaagaactAGGATTTGGTCTCAGAGTCACAGACATCAAAGCTAAATGTTACGCTTTAGCAGTCCAAGCAGGAAAAGTTCACCAATTTAACGATGCTAAACGTAAAGCTAGGCCTTATTGGTGGTGGTCTTTTAAAGAACGGTACGGGCTTTCATTGCGCACGCCAGAAAAGCTTGCAGCATGCCGAGCTGTTACTGCTAACAGACAAAACATTGACAGTACATACAGTGCAGACATACAGTGCAATGAAGTGTAA
- Protein Sequence
- MKSSAGIHATLHASRFKEAYMKVIKDNWSVYKASKEYGIPWSTLRRHIATHGGESFDLPKLGRPFTLDSDLECKFVSYIIKMQELGFGLRVTDIKAKCYALAVQAGKVHQFNDAKRKARPYWWWSFKERYGLSLRTPEKLAACRAVTANRQNIDSTYSADIQCNEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01153895;
- 90% Identity
- -
- 80% Identity
- -