Psmi043707.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius smintheus
Gene Symbol
clz9
Assembly
GCA_036936625.1
Location
JAUPFT010000016.1:16045891-16048493[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.7e-08 2.1e-05 26.4 0.0 1 40 14 53 14 57 0.93

Sequence Information

Coding Sequence
ATGCcacgtacatatataaaaaagaaaaaaaagccaTATACACAGGAAGACATGAAAAGAGCTCTTGAAGAAGTAAAGAACGATCACTTATCAATGTATGCTGCATCCAAAAAATATCAAATCCCAACTACGACTTTATTTGAAAGGCTGAAAGGAATCAGTACGCAAAGCGTAGGCAGACCACAAGCAATTCCAATCGAAGACGAAAAAAGATTAGCCGAGGCAATCCGAGTCATGGAAAAATGGGGTTTTGGTTTGTCAAGGCGAGAAATTTTAGAAATGGTTGAGGATTATGTCAAGAAAAATAAtctaaataccgtattcaaaaacAACAAGCCAGGGACTGACTGGTTTATAAATTTTCGTAAACGTAATAGATTATCCATCAAGAAGCCGCAACCTGTAGAACATGTGCGGAAGCAAATGACGGACCCGTTTATAATTTTTGACTATTTTGATTTGTTGCAAGACACTTTGACTGAACTGGATCTATTTGAAAAACCACATTTAATATGGAATTTAGACGAAACATCGCTATGTATGGACCCTACTAAAACTAAAGTGGTTGGAGCTATAAATAAACCCTGTTCTAGAACCACGTGTGGAAGTGGCAAAGAAAATGTGACAGTTTTAGCTACTGCAAGCGCTGCTGGCAATAAATTGGAccctttaataatatataaaggcaAAAATGTATGGGATCAGTGGATGACCGACTCACAAAACTATGACTTTGACATCGCATATGCAGCTAGTGCAAAGGGTTGGATGGAGACGGAaatcttttataattactttgaaAAAGTTCTGATTCCAGCTCTGGGTGAAGAGCGGCCTGTCTTGTTAGTTTATGATGGGCACTCCACACATGTGAATGCAAATGTAGTAGATCTGGCTGTGCAAAATAACATTACAATCATGAAGCTTCCACCACATACATCACACTTACTACAACCATTGGATGTAGCGGTGTTTAAATCTTTTAAGATCAATTGGGATGCCAAACTTGTAGAGTGGCAGCGGCGTAATATAGGCATTAAAATGCCCAAAAATGTATTCGCGAAAACATTCGCGGATACATGGCAAGAGACGAATCCTGAAATTATCAGAAACGGTTTCAAAAAATCCGGAATTTATCCATTCAACCGCAACGTAATACCCGTAGATAAATTCGAGTCAGAAGCCTACAAGAGATACGTGAAAAAAAAGGATGAACATTCTCAAAGCCAGCTAGAGTCCAAAAATCCGAAATCATTAAAAGAACTGTGCGTCCGTGTTTTCAATGAAGAGTTTTACTTTAGTGAGGCTCCTAACCGTGCTGGAAAAGTAGTAAGTACTCTAAGCCAAAATGACTTCAGTTCTGAATATGTGACTTTCTTGAGTCAACTGTCAAAGAAAGACGACGCTTGTCAGCCTTTTGTAGCAAACAATACATCAGATTCACCAAAATGCTTACAGTTCCAAAAAAGCTGTCACCTTAAgccgaaagaaaatgaaaaacctAAGATAAATATTATATCCAATCTAAAAGTTAATTTCGAAGATCTTTTGCTAGAAAAGGTAAGACAGGAAAAAAGAGATAAGGTGCCGGTAAAAAAGAAGAGGGTAGCTAAAGGTGCAGAAGTAATAACTCTATCACTaggcaaaaaaaaatttgaagaagGAAAAAAGCAAACTTTACTCGAAAAAGTCAAGACTCATAATAAAACAGGGAAACGTCGTAAAGAAGTTAAACAACCCTCACAAACAGGCACATCAGGTACAAAAAAAGTGAACAAAAGGAGACAAAGCAAAAAGTCAAAACGACAAGAAAATTTAGATAAATCAACTAGCCATTCAGAGACAATTAGCATCTACAGTGACACAGATATTAACGAGTCTTCATTCTTAGACGATTTACTAAACGAAGATGAGTTTAAATTTTTAGAAGAAAATATCGGCGATGGAACATATGATGAATGTGCCAAAATACTTAATGAAGTAAACGTTTCTAAAAAAGGGAAGGGTAAAGGAAAAAAGAGTAAGGGAAAAGAAAATACGAAAGACAAAAATGAAGTGAATAAAGGTAGTGACAAACCTAAAGAGTTCAGTCCAGACGATTTAAATTCATGCAATAACGTTGATAAGAATGACAAAAAGACGGTCAAAAATGGGACTGACATAAAATCTACGAACACTACTGAAGACGAAGAAGAAAAAGATATCCAGGACCAGAAAGACGGTTACGAACTGAACGATTCAGTACTCGTAAGGTACTACTGCAGAAAAAAATGGAATTACTTTGTAGGCTTTATTGAGAAAGTCATAAACAAGGATGAGGAAACTTACTATACAGTAAATTTCCTGAAAACAATAAGAAGACCGCAACTTACATTTGTAATATCAAAAAAGAAGGATTATGATGAAGTAACAAAGCAACTAATTGTAAAGAaggtaaaattagaaaaaaataatgaaagctaCAAAGAATACATATTGTCTGAAGAAAAcgacaaaatttatttttga
Protein Sequence
MPRTYIKKKKKPYTQEDMKRALEEVKNDHLSMYAASKKYQIPTTTLFERLKGISTQSVGRPQAIPIEDEKRLAEAIRVMEKWGFGLSRREILEMVEDYVKKNNLNTVFKNNKPGTDWFINFRKRNRLSIKKPQPVEHVRKQMTDPFIIFDYFDLLQDTLTELDLFEKPHLIWNLDETSLCMDPTKTKVVGAINKPCSRTTCGSGKENVTVLATASAAGNKLDPLIIYKGKNVWDQWMTDSQNYDFDIAYAASAKGWMETEIFYNYFEKVLIPALGEERPVLLVYDGHSTHVNANVVDLAVQNNITIMKLPPHTSHLLQPLDVAVFKSFKINWDAKLVEWQRRNIGIKMPKNVFAKTFADTWQETNPEIIRNGFKKSGIYPFNRNVIPVDKFESEAYKRYVKKKDEHSQSQLESKNPKSLKELCVRVFNEEFYFSEAPNRAGKVVSTLSQNDFSSEYVTFLSQLSKKDDACQPFVANNTSDSPKCLQFQKSCHLKPKENEKPKINIISNLKVNFEDLLLEKVRQEKRDKVPVKKKRVAKGAEVITLSLGKKKFEEGKKQTLLEKVKTHNKTGKRRKEVKQPSQTGTSGTKKVNKRRQSKKSKRQENLDKSTSHSETISIYSDTDINESSFLDDLLNEDEFKFLEENIGDGTYDECAKILNEVNVSKKGKGKGKKSKGKENTKDKNEVNKGSDKPKEFSPDDLNSCNNVDKNDKKTVKNGTDIKSTNTTEDEEEKDIQDQKDGYELNDSVLVRYYCRKKWNYFVGFIEKVINKDEETYYTVNFLKTIRRPQLTFVISKKKDYDEVTKQLIVKKVKLEKNNESYKEYILSEENDKIYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01158827;
90% Identity
iTF_01158827; iTF_01158828; iTF_01158829; iTF_01158830; iTF_01158831; iTF_01158824;
80% Identity
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