Psmi051954.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- JRKL
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000019.1:30322095-30323876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-08 5.4e-06 28.3 0.4 2 45 16 57 15 57 0.87
Sequence Information
- Coding Sequence
- ATGGTTAACAACTACATACGGAAGACCACTAGGGCCTCTTGGTCGGAAGAAACAATGAAAAAAGCAATTGCAGAGGCAACGAAATCTTCAATAAAAAGTGCATCTCAAAAATATGGAATACCGTATACCACGTTGCAACGTCATGTAAAATCGAATAGTAGTAAAAAACGTCTCGGCAGGTTTAAGCCTGTATTTAATAAAGAACAGGAAAAAAGTTTACAAAACCATTTAAAGGATTTAGATGCACTGTTTTACGGTCTGTCTAGAAATGAATTTATGGAATTAGCTGGTGAGTACGCTAAGCGACAAAACATACAAACGCCATTCAAGAATAATATTGCCGGTAACCAGTGGTTTAAAAATTTTCTGAAACGTCATTCCGATATTGTTTTAAGAAGCCCAGAGCCGACGTCGGTAGCTAGATTATCAGCTTTTAACAAACCAGCTGTGACACGTTTTTATGATTTGTTGGAGACCATTATTGAAGAGAATCATATCAATCCTAATATGATATTTAACATGGATGAGACAGGTGTGAGAACCTCGTCTACAAAACCACCAAAAGTACTTTCAGTACTTGGTAAGAAGCAGGTCGGCATGGTGAGCAGCTTAGAGAGAGGTACTTTGACGACAGTCATCTGCTGCTGTAGCGCAACAGGTTTTTTCGCACCTCCCccattctttatttttaaaagaaaaaggtttcagCCACGTCTACTAGATGGGGCATGTCCTGGTAGTGAAGGCACCATATCAGATAGTGGATGGGTAAGCGGAGCAATTTTCTTACAATGGCTAATAGTTTTTGTGACTTATGTGCGCCCTACGAGTGAATGTAAGGCTTTGTTAATTCTGGATAATCATGAATCTCATAAATATTACCCTGCTTTAGAATATGCCAGAGatcataatgtaatatttttgtccATTCCTCCACACACATCCCATAAGTTACAGCCACTTGATGTTGCTGTCTATGCACCATTTAAGGTGGCCTTTGAAATTGAGTTGAATAAGTTCCAAAAGCATTATCCAGGGCGAGTTATTTCACAGTACGAAGTTGTACGTCTGGTTACACCTGCTTACTTAAAAGTAGCAACTCCACAAAACGCCATGAGCGGATTTAGAGCAGCTGGCATTTATCCATACGATAGAAATGTGATAGATGAAGCGCTATTCGCACCTTCTACAGTCTACGAGGCATCAACTTCACACTCTGCAGGCGAAGACCACGGGGTTCCAACACCTTTTCAATTAGAAGCTACTGTTTCACCTATGACAACAGATACGTTCGCCATACCACATGGTTCAGAAACACCACCCATTCTGTCCACTATACCACGAGATGAAATTACTCCACCAGCTGTGACGACACCACCCATTTTGGCACACGTACACACTCACGAGATCATTCCTCCGGACCCAACAACATTTGTTTCGAAGACTCCAGAAAAGACACAATCTACGTTGACAGTACCACACACATCCGTTTGTACATTAGCTGTACCACAAGCCATTCATTGTTTTACTGCATCCAGTGTTGAAATACTCAAAGAAATTCATCCATTGCCCCAGCAACAGTTTAAAAAACTAAGTAGAGGTAGAAAACTACAAAAATCGGAAATATTAACCAGCACTCCTATAAAAACCATACaagaagataaatttaaaaaaaccagTTTTAAAATAAACCTTGGAGCTTCTGTATCTGGACTAAAGAAGTCAACCATCAGCAAGAAAAAAGACTGttcgaaattaaagaaaaaattgccGAAAAGATAA
- Protein Sequence
- MVNNYIRKTTRASWSEETMKKAIAEATKSSIKSASQKYGIPYTTLQRHVKSNSSKKRLGRFKPVFNKEQEKSLQNHLKDLDALFYGLSRNEFMELAGEYAKRQNIQTPFKNNIAGNQWFKNFLKRHSDIVLRSPEPTSVARLSAFNKPAVTRFYDLLETIIEENHINPNMIFNMDETGVRTSSTKPPKVLSVLGKKQVGMVSSLERGTLTTVICCCSATGFFAPPPFFIFKRKRFQPRLLDGACPGSEGTISDSGWVSGAIFLQWLIVFVTYVRPTSECKALLILDNHESHKYYPALEYARDHNVIFLSIPPHTSHKLQPLDVAVYAPFKVAFEIELNKFQKHYPGRVISQYEVVRLVTPAYLKVATPQNAMSGFRAAGIYPYDRNVIDEALFAPSTVYEASTSHSAGEDHGVPTPFQLEATVSPMTTDTFAIPHGSETPPILSTIPRDEITPPAVTTPPILAHVHTHEIIPPDPTTFVSKTPEKTQSTLTVPHTSVCTLAVPQAIHCFTASSVEILKEIHPLPQQQFKKLSRGRKLQKSEILTSTPIKTIQEDKFKKTSFKINLGASVSGLKKSTISKKKDCSKLKKKLPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158812;
- 90% Identity
- iTF_01158812; iTF_01158841; iTF_01158808; iTF_01158807; iTF_01158809;
- 80% Identity
- -