Psmi000119.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000001.1:598674-600974[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7 1.3e+03 1.5 0.0 27 43 97 113 91 114 0.85 2 2 1.2e-07 3.4e-05 25.7 0.1 2 43 209 250 208 252 0.88
Sequence Information
- Coding Sequence
- ATGCACTCGCGCTACACTTCACAAGAATATGCGAACATGCACCTCATTAATGGGAAATGCAGATGCAACGCAAATTCCGCCGCTAGACTTTATCGTGAAAGGTATCCAAATTTAGAGCGCTATCCGGAGCACCGCGTGTTTGTTAATGTGCACCGTTCACTCACGGAGGGTGGCCATTTCCCGAATCAAATACGCGCTGGAGGTAGAGCTCGCTTTCCTTACAAGGAAGAAGTGTTGCAAGAGAGCGCAGATGACCCAAGTATTTTCGTTCGTGCAACTGAAGAACGGGAAATACCCAAAAGCACATCACATCGTATTTTACAAAGAGCCGAAATGCATCTGTTTCACGAGACAGTCGTCATTTACCAAATAGAGCGGCAAGAGGCCATCGGTAAGATTGGTGGCCCAGGAAGAGTTGTCCAAGTAGACGAGTCAACATTTGGAAAAcggaaatataataaaggAAGGCGGATTGAGGGCCACTCGATCCTCAGCCTCATTGAGGATGGAAGTGAAGATTTGCGACTAGAGGTGTGCCCCAAAACATCAGGTCAACCGACGAGTGCCAATTTTGCAATTTTGGTCAGTAACTATATAAGGAAAACGGACAAAGCGTCCTATTCTAGGGAGAAGCTACAAGCAGCAGTAAGAGCTGTAAAAAATGGGGAGCTGAGTGGTTACAAGGCTTCTCAGGAGTATAAGATTACGAGAATGACCATAATGGACCATGTTAACAATAAGAGAACCAAATCAAATTCACTAGGAAGAAACACAGCATTACCATAA
- Protein Sequence
- MHSRYTSQEYANMHLINGKCRCNANSAARLYRERYPNLERYPEHRVFVNVHRSLTEGGHFPNQIRAGGRARFPYKEEVLQESADDPSIFVRATEEREIPKSTSHRILQRAEMHLFHETVVIYQIERQEAIGKIGGPGRVVQVDESTFGKRKYNKGRRIEGHSILSLIEDGSEDLRLEVCPKTSGQPTSANFAILVSNYIRKTDKASYSREKLQAAVRAVKNGELSGYKASQEYKITRMTIMDHVNNKRTKSNSLGRNTALP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -