Basic Information

Insect: Parnassius smintheus
Gene Symbol: clz9
Assembly: GCA_036936625.1
Location: JAUPFT010000012.1:41342720-41348464[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.4e-10 1.2e-07 33.6 0.0 1 39 8 46 8 50 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.4e-10	1.2e-07	33.6	0.0	1	39	8	46	8	50	0.90

Sequence Information

Coding Sequence: ATGGCGCCTAAAAAAGATTATAAGCCTGAACAAATGGCTCACGCCATTGAGGCAGTGCGAAAGGAAGGACAATCAGTATCTGCAGCAGCTAAGCGATTTGGAGTGCCGAGAATTACTCTCCACAATAAAATCTCCGGTAAGAGCCCCATGGTATGCACTATGGGGCCTAGTACAGTCTTGACAACAGTAGAAGAAGATTTGCTTGTGAAATGGGCAATAGCAAGTGCCGAAAGACGATTTCCTATCACTAGAGAACAACTTTTAGATAGCGTCCAGCGAATAGTTACGGTGCAACGTAAATCTACTCCTTTTACAGCAAACAGGCCAGGGAAGAAATggttttcttcttttattaaaagaCATCCGATATTAGCAGAAAGAACGGCCGAAAACCTCAGTGCAGCACGCAATGAAGTGACAGAAGAGCAAATAAACAACTGGTTCAAAGAAGTGCATGAATATTTGGCCGAAAAGGGATTGCTTGAAGCTCTGAAAGAGCCAAGCCGAGTTTTTAATGCAGATGAGAGCGCCTTTTTTCTTGCGCCAAAACCTGGACGAGTGCTTGTTAAACGAGGGGAAAAGCATGTTTATGCGGCAAGTGGcgatgaaaaagaaaatttaaccgTCTTGTTGACTGCAAATGCTGCGGGTACACTAGCACCACCCATGATTGTTTTCGCCTATGATCGAGTCCCGGACAGAATTTCTAGCAGTGTGCCAGGAGAATGGGGCATAGGAAAGTCGGAGACCGGTTGGATGACTGGTGAGACCTTCTACGAGTTTGTGACTACAATTTTTAATCCTTGGCTGATTGTAAAAGGCATCCAgaaaccaattttgttttttgtgGATGGTCATAGATCGCATCTTACACTTCATCTGTCCAAGTTCTGCTCTGAAAATGACATAGAAATTATAGCCTTGTACCCTAACTCGACCCACATTCTGCAGCCTATGGACATATCTCTTTTCAGACCGCTGAAAGTATATTATCGTAAAGCAGTTATCCAGTGGAAAATGGAAAATTCGGGAAACAAGTTGAAAAAGGAAAACTTTGCTCCCATCTTTCAAAAAGCGTTAAAGAATATAACGACGGACTGCATTAAAAATGGATTTAGGGGCGGTGGTCTGCATCCATATGGTCCACAATATATTGATATGTCAAAACTCACAAAGCGGAATACTGTTTCTGATCTAGCAAATGAAAACCAAAATGAAGAAAGAAgccattttttacaatttttagaaaCCGAAATTACAAAACATTTTGGTCAAGAAAAGTTAGACCTATTTAACAGTCTTTATTATgaaggaagaaatgttctcgaaaaCATGGCATTAGATGAAGATTTGAATCTCTATATAGTGTGGGCACACAACAAGCAAATGTCAATTTCGCTAGAATCTAGTTCCGCACCTGCTGCATTAAATAGGGAATCTTCACCGACTTCAGATaacgtattatataataacacGTGTATTATGCAAGAAAATGTTATGCCAACAGACTTCGATGACAACGGCAAAGTAAGCAGTGCACTTGATCTCATAGCACCGTCAACCAGTGCACTAGATGGTGTCTCTGAAACAGTGGCATTCATACCAACGCCAAATACGCCATCAAAAGTTGATGAAGCCATATCTGATGCGAAATCCCATAAAGATACAACAAGCGATATTCTGGGTAGCACAGTGCCATCAGTGTCAGAAATGCCGTCTCAAGAGACTGAAAAAATACCTATCGAAGACACAAGGGTAACGATAGGTAGTACAGTGACTTCTTCAATCGAAATTACAACGTCAGATACGTTAGCCAGGGTTGATGGATCCCTTTCTTTGGCTGCAAAAACTCCTGCaaaaaacacaataagtaatgCGCTAGGTGTCACAGTTCCATCGCCATTCAAAAAATGTCTTTTCTGGCCTGACAATGAAAGTACTAAGAAAactaagaagaaaaaagaaaaattaccaTCAGCTGTAACGAGCAAAGCATGGCAAGAATACCATGAAAAAAAAGCCaccgaaaaaaaaagaattttagaaGAAAAGGAATTGAAAGCTAAGCAGAGAATcgagaaaaaaaatatcaaagaaaaacttGCCAAGGAAAAGAAGGGtaaaacaaaatctaaaaaaccAAAGATGCCTGAAATATCATCATCTGAAGATACAGAAGCTGAAATAGAATATATTGAAAGTGGCGAAAGCGAATGGAACGAAGAGACTGAATCAAATACCTATCAAGGAGAAATACTGGAAAAACAAAATGAACGTAAAGCAATGGATAAAAAGAAGATTTCAGTACAAAGGAAGAGAAAACGATCTATTACGGAAGATAGTAATTCTGAATCAGAGTTGCCTTTGACTCAAATAGCACAttctaataaagttaaaaatgctaAAAAGGATATCAACAAGGGTTCTTTTGTCATCATTATGTGGCCAGAAAGGCCAGATAAAATTTGGTATAAAACTACTGATATAGTCGAAGTTATAAATCCTCCTATCAAACATAATAACAGAGGCTTTTACAAAGTACCAGAAATGGAGAAGTTTTTGCCTGACATTTATATGACCTAG
Protein Sequence: MAPKKDYKPEQMAHAIEAVRKEGQSVSAAAKRFGVPRITLHNKISGKSPMVCTMGPSTVLTTVEEDLLVKWAIASAERRFPITREQLLDSVQRIVTVQRKSTPFTANRPGKKWFSSFIKRHPILAERTAENLSAARNEVTEEQINNWFKEVHEYLAEKGLLEALKEPSRVFNADESAFFLAPKPGRVLVKRGEKHVYAASGDEKENLTVLLTANAAGTLAPPMIVFAYDRVPDRISSSVPGEWGIGKSETGWMTGETFYEFVTTIFNPWLIVKGIQKPILFFVDGHRSHLTLHLSKFCSENDIEIIALYPNSTHILQPMDISLFRPLKVYYRKAVIQWKMENSGNKLKKENFAPIFQKALKNITTDCIKNGFRGGGLHPYGPQYIDMSKLTKRNTVSDLANENQNEERSHFLQFLETEITKHFGQEKLDLFNSLYYEGRNVLENMALDEDLNLYIVWAHNKQMSISLESSSAPAALNRESSPTSDNVLYNNTCIMQENVMPTDFDDNGKVSSALDLIAPSTSALDGVSETVAFIPTPNTPSKVDEAISDAKSHKDTTSDILGSTVPSVSEMPSQETEKIPIEDTRVTIGSTVTSSIEITTSDTLARVDGSLSLAAKTPAKNTISNALGVTVPSPFKKCLFWPDNESTKKTKKKKEKLPSAVTSKAWQEYHEKKATEKKRILEEKELKAKQRIEKKNIKEKLAKEKKGKTKSKKPKMPEISSSEDTEAEIEYIESGESEWNEETESNTYQGEILEKQNERKAMDKKKISVQRKRKRSITEDSNSESELPLTQIAHSNKVKNAKKDINKGSFVIIMWPERPDKIWYKTTDIVEVINPPIKHNNRGFYKVPEMEKFLPDIYMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01158673;
90% Identity: iTF_01158697;
80% Identity: -