Psmi056884.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- clz9
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000021.1:35908002-35910044[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-10 9e-08 34.0 0.0 1 39 8 46 8 50 0.90
Sequence Information
- Coding Sequence
- ATGGCGCCTAAAAAAGATTATAAGCCTGAACAAATGGCTCACGCCATTGAGGCAGTGCGAAAGGAAGGACAATCAGTATCTGCAGCAGCTAAGCGATTTGGAGTGCCGAGAATTACTCTCCACAATAAAATCTCCGGTAAGAGCCCCATGGTATGCATTATGGGGCCTAGTACAGTCTTGACAACAGTAGAAGAAGATTTGCTTGTGAAATGGGCAATAGCAAGTGCCGAAAGACGATTTCCTATCACTAGAGAACAACTTTTAGATAGCGTCCAGCGAATAGTTACGGTGCAACGTAAATCTACTCCTTTTACAGCAAACAGGCCAGGGAAGAAATggttttcttcttttattaaaagaCATCCGATATTAGCAGAAAGAACGGCCGAAAACCTCAGTGCAGCACGCAATGAAGTGACAGAAGAGCAAATAAACAACTGGTTCAAAGAAGTGCATGAATATTTGGCCGAAAAGGGATTGCTTGAAGCTCTGAAAGAGCCAAGCCGAGTTTTTAATGCAGATGAGAGCGCCTTTTTTCTTGCGCCAAAACCTGGACGAGTGCTTGTTAAACGAGGGGAAAAGCATGTTTATGCGGCAAGTGGcgatgaaaaagaaaatttaaccgTCTTGTTGACTGCAAATGCTGCGGGTACACTAGCACCACCCATGATTGTTTTCGCCTATGATCGAGTCCCGGACAGAATTTCTAGCAGTGTGCCAGGAGAATGGGGCATAGGAAAGTCGGAGACCGGTTGGATGACTGGTGAGACCTTCTACGAGTTTGTGACTACAATTTTTAATCCTTGGCTGATTGTAAAAGGCATCCAgaaaccaattttgttttttgtgGATGGTCATAGATCGCATCTTACACTTCATCTGTCCAAGTTCTGCTCTGAAAATGACATAGAAATTATAGCCTTGTACCCTAACTCGACCCACATTCTGCAGCCTATGGACATATCTCTTTTCAGACCGCTGAAAGTATATTATCGTAAAGCAGTTATCCAGTGGAAAATGGAAAATTCGGGAAACAAGTTGAAAAAGGAAAACTTTGCTCCCATCTTTCAAAAAGCGTTAAAGAATATAACGACGGACTGCATTAAAAATGGATTTAGGGGCGGTGGTCTGCATCCATATGGTCCACAATATATTGATATGTCAAAACTCACAAAGCGGAATACTGTTTCTGATCTAGCAAATGAAAACCAAAATGAAGAAAGAAgccattttttacaatttttagaaaCCGAAATTACAAAACATTTTGGTCAAGAAAAGTTAGACCTATTTAACAGTCTTTATTATgaaggaagaaatgttctcgaaaaCATGGCATTAGATGAAGATTTGAATCTCTATATAGTGTGGGCACACAACAAGCAAATGTCAATTTCGCTAGAATCTAGTTCCGCACCTGCTGCATTAAATAGGGAATCTTCACCGACTTCAGATaacgtattatataataacacGTGTATTATGCAAGAAAATGTTATGCCAACAGACTTCGATGACAACGGCAAAGTAAGCAGTGCACTTGATCTCATAGCACCGTCAACCAGTGCACTAGATGGTGTCTCTGAAACAGTGGCATTCATACCAACGCCAAATACGCCATCAAAAGTTGATGAAGCCATATCTGATGCGAAATCCCATAAAGATACAACAAGCGATATTCTGGGTAGCACAGTGCCATCAGTGTCAGAAATGCCGTCTCAAGAGACTGAAAAAATACCTATCGAAGACACAAGGGTAACGATAGGTAGTACAGTGACTTCTTCAATCGAAATTACAACGTCAGATACGTTAGCCAGGGTTGATGGATCCCTTTCTTTGGCTGCAAAAACTCCTGCaaaaaacacaataagtaatgCGCTAGGTGTCACAGTTCCATCGCCATTCAAAAAATGTCTTTTCTGGCCTGACAATGAAAGTACTAAGAAAactaagaagaaaaaagaaaaattaccaTCAGCTGTAACGAGCAAAGCATGGCAAGAATACCATGAAAAAAAGCCaccgaaaaaaaaagaattttag
- Protein Sequence
- MAPKKDYKPEQMAHAIEAVRKEGQSVSAAAKRFGVPRITLHNKISGKSPMVCIMGPSTVLTTVEEDLLVKWAIASAERRFPITREQLLDSVQRIVTVQRKSTPFTANRPGKKWFSSFIKRHPILAERTAENLSAARNEVTEEQINNWFKEVHEYLAEKGLLEALKEPSRVFNADESAFFLAPKPGRVLVKRGEKHVYAASGDEKENLTVLLTANAAGTLAPPMIVFAYDRVPDRISSSVPGEWGIGKSETGWMTGETFYEFVTTIFNPWLIVKGIQKPILFFVDGHRSHLTLHLSKFCSENDIEIIALYPNSTHILQPMDISLFRPLKVYYRKAVIQWKMENSGNKLKKENFAPIFQKALKNITTDCIKNGFRGGGLHPYGPQYIDMSKLTKRNTVSDLANENQNEERSHFLQFLETEITKHFGQEKLDLFNSLYYEGRNVLENMALDEDLNLYIVWAHNKQMSISLESSSAPAALNRESSPTSDNVLYNNTCIMQENVMPTDFDDNGKVSSALDLIAPSTSALDGVSETVAFIPTPNTPSKVDEAISDAKSHKDTTSDILGSTVPSVSEMPSQETEKIPIEDTRVTIGSTVTSSIEITTSDTLARVDGSLSLAAKTPAKNTISNALGVTVPSPFKKCLFWPDNESTKKTKKKKEKLPSAVTSKAWQEYHEKKPPKKKEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158673;
- 90% Identity
- iTF_01153816;
- 80% Identity
- -