Psmi025035.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000009.1:14578117-14578749[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-11 1.1e-08 36.9 0.0 4 38 17 51 14 58 0.86
Sequence Information
- Coding Sequence
- atggaatctactAAAAAGAAATACGCAAGATTCCGTTATACTCAACAACAGTTAGAGGAGGCTCTTACCCGTATAACAAATAACGATTTGTCTATTAATAAAGCCAGCAAAATATACGACATACCCAAATCAACgttaagtaataaattaaataataaagtaccaTGGCAACGAAAAATGGGTCCATTAACACAACTAACTTTCGACGAAGAAAACAAGCTAGCAGACTGGATTTTAACAAAAGCTAAACTTGGGTTTCCAATGCACCCGGAAGAAGTTTATGATACTGTGGAAATATTCTTGAAACAAAATGAGAGGGAGAATAAATTTACAAAAGGCCGACCGGGGAAAAAATGGCTTACTTTGTTTTTGCGAAGACATCCCGAAGTAACTAAAAGAAACGCTGAAATAATATCAAAAGCTAGGGCAGCGGTTACAGAAGAGGCCATCAGAAATTGGTTTACTGAATTGAACAAGTTTTTAGAGGAAGAAAATGCCTTAGACATTAAAGATGACCCGACTCGTATTTTCAATTCAGATGAAACTGGCGTCATGACTTGTCTTAAAACGGGGCTGATTTTGGGgcccaaaaattataaaaatacatacataatttgtAAGAGTAAAGACTGA
- Protein Sequence
- MESTKKKYARFRYTQQQLEEALTRITNNDLSINKASKIYDIPKSTLSNKLNNKVPWQRKMGPLTQLTFDEENKLADWILTKAKLGFPMHPEEVYDTVEIFLKQNERENKFTKGRPGKKWLTLFLRRHPEVTKRNAEIISKARAAVTEEAIRNWFTELNKFLEEENALDIKDDPTRIFNSDETGVMTCLKTGLILGPKNYKNTYIICKSKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154960;
- 90% Identity
- iTF_01154960;
- 80% Identity
- -