Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000001.1:47304198-47317609[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3 8.1e+02 2.1 0.0 18 39 42 63 36 65 0.91

2 2 5.3e-11 1.4e-08 36.5 0.0 2 44 126 167 125 168 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3	8.1e+02	2.1	0.0	18	39	42	63	36	65	0.91
2	2	5.3e-11	1.4e-08	36.5	0.0	2	44	126	167	125	168	0.93

Sequence Information

Coding Sequence: ATGAGAAAAGTTGGAAACATAAATATTGTTAGTAGATTCGAAGGGTACACCAAAGGAACTACGAAAGGTCATGCCGACTTATCGAAGTATAAACAAGTCTATGAACATGTAAAAGCCAAATCTTCTTTAGGTAAAGCGGCAGAAAAGAATGGTCTGAACAACTGTTCCCTGTTGAGGTATGTACGTAAACGAGATGTGACTGGTGACGATGAAAATCAAGAAATGGATTATGAGGCCCACAATCGAATGTTTAAGCAGGAACAAGAGCGTGAGCTATGTAAATATTTGATTAGATATGCAGACATACATTTTGGCCTAACTAAAAATGATaTGGCGCGCACTAAagttaataaaagaaagaaaggtAACCACACTGCTGATAACATGCTTCAGGCTATCAGACATTATAGGCAAGGATGGAGTATCAGAAAAGCAGCTAAAGAGTATAATGTATGCTATCCGACACTGCAacgttacattaaaaaaaatgtaaatgttagtACTGCGGATTTACACAAGCAGCGATTGACACCCAATTATGATGCCAACAAAATATTTACTCATGAACAAGAAAAATCACTGACAGAATATATCAAAGAATGTGCATTAAAATTTTATGGGTTATCCACTAAAGACGTTCGAAGCCTTGCTTATCAAATGGcaactattaataatattaaaactccTGATAGTTGGAATCGTGAACAAATGGCAGGCCTTGAAAGGCTTCGGTCATATAGATCAAGGAATCTGGATTTATCGTTGAAAAAACCAGAATCCTGCAGCCTTGCTCGTGCCACCGCTTTTAACAAAGAGACGGTTAAGATGTTTTTTGATAACTTAAAGAACGTCATGGAACTCCACCCATCTTTTGGAAATGGCTGTAGAATCTACAATTTGGATGAAACTGCTACTACAACCGTTCAGAAGCCGCTAAAAGTTATAGCACCTAAAGGGCGCCAGAATATTGGTAAAATAACTAGTGGAGAGAAGGGTACATTAGTGACAACATGTGCTATTGTCTGTGCGTCTGGGCAAGCCTTACCTCCGGCGTTAGTTTTTCCAAGGAAGAACTTAAAGGATTATATGATGACTGGCTCCCCTATTGGATCCCTCGGACTTGCTAATCCAAGTGGGTGGATGAACGCAGAGTTGTTTAttgaagtaatgaagcattttataaaacatacctCTGCAAGTTCAGAAAATCCAGCTTTATTAATCATGGACAATCACGAATCCCATTTAAGTATCGAAGCTCTGGACATGGCGAAACGTTCTGGAGTGACAATCCTTACATTACACCCCCATACAACAAGTAAAATGCAACCTCTTGACGTGGGCTTAATTGGTCCCTTCAAAGCCTATTATAATAGTGCCGTAGATTCATGGTTAATGAGAAATCCCGGAAAACAGATGACTATATACAATATAGCCGAGTGCGTAGGATACGCATATGCAAAATCAATGACGCCGGTTAATATAATCTCTGCTTTTAAAAAATGTGGTATTTTCCCGTTCGACGCAGACGTTTTTAGCGAAATTGACTTCATGCCATCTACTATTACCGATAGAGACCAACCGGAAACGTCATCCGCGAAATTAATGGCTGCACCTTCTGAACAATTAAACGACAGAAAGAATCTTGTTAGTCCGTCATCAGATGTTACCTGTGCTCATAGTCCAATACCGTTTGAGGAAAACCCTTCTGAAGATGTTGGAGGTGATAATACTGGAATCCGGAGTGCTGAAAGTCCATCTTTATCGGAATCTACAACTCCTGAACACATTATGGCTCTTTTTGAAGCACAAAATTCTCAAAGTCCATTTTCAATTATGCACGAAATTCCGAAAGATACAGGCGACCGGACATTTAAATCACCCAAAGAATTTATGCTGCCTTTAAAAAGTGGACCACGGGCTAGACTTCGTAAGCCGAGAAAACTAGGAAAAAGCATGATTGCTACGGATACGCCAGAAAATAATCAGATAGCTGAAGAACGAAAAAAACACGAGACAAGAAaaccAAGGAAAAAGAAGAAAGCAAAGAAGGTTGTAATTCCATCAGATCCTGAAACAAGTGAAGAggaaaattttgaggttataaattTAAGCGAGTCTGATATAAGTGGTAGAGAGGATGAAGATGAAGATCTTGACGCTGACAATTTACCTATGGTAAACGAAAACTTTCGAGAACTAGAAAGAAAGCTTAAATGTAATGATTACGTATTGGTATCATTCAAtactaaaaagataaaaatatattatgctgCGGTAATAACAGAAGTTTTGAATTCTGAGACTTACGTGGCATCTTTTATGAGACTTAAAGTAAAAGAAGATATGAAATGTAAATACTACATGCCATTAGAACCGGATTTTGCTGAAGTGAATATTACAGATATTAAAATGATTCTACCGCTACCAAAAATAAATGGCACAAAAACCCGAAACTCTACTTATGTTTTCCCACTTCGCATGTCACCAAAGTTAAATTTGCGATAG
Protein Sequence: MRKVGNINIVSRFEGYTKGTTKGHADLSKYKQVYEHVKAKSSLGKAAEKNGLNNCSLLRYVRKRDVTGDDENQEMDYEAHNRMFKQEQERELCKYLIRYADIHFGLTKNDMARTKVNKRKKGNHTADNMLQAIRHYRQGWSIRKAAKEYNVCYPTLQRYIKKNVNVSTADLHKQRLTPNYDANKIFTHEQEKSLTEYIKECALKFYGLSTKDVRSLAYQMATINNIKTPDSWNREQMAGLERLRSYRSRNLDLSLKKPESCSLARATAFNKETVKMFFDNLKNVMELHPSFGNGCRIYNLDETATTTVQKPLKVIAPKGRQNIGKITSGEKGTLVTTCAIVCASGQALPPALVFPRKNLKDYMMTGSPIGSLGLANPSGWMNAELFIEVMKHFIKHTSASSENPALLIMDNHESHLSIEALDMAKRSGVTILTLHPHTTSKMQPLDVGLIGPFKAYYNSAVDSWLMRNPGKQMTIYNIAECVGYAYAKSMTPVNIISAFKKCGIFPFDADVFSEIDFMPSTITDRDQPETSSAKLMAAPSEQLNDRKNLVSPSSDVTCAHSPIPFEENPSEDVGGDNTGIRSAESPSLSESTTPEHIMALFEAQNSQSPFSIMHEIPKDTGDRTFKSPKEFMLPLKSGPRARLRKPRKLGKSMIATDTPENNQIAEERKKHETRKPRKKKKAKKVVIPSDPETSEEENFEVINLSESDISGREDEDEDLDADNLPMVNENFRELERKLKCNDYVLVSFNTKKIKIYYAAVITEVLNSETYVASFMRLKVKEDMKCKYYMPLEPDFAEVNITDIKMILPLPKINGTKTRNSTYVFPLRMSPKLNLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01158757; iTF_01158734; iTF_01153797; iTF_01158805;
90% Identity: iTF_01158805;
80% Identity: -