Psmi023925.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius smintheus
Gene Symbol
cheC
Assembly
GCA_036936625.1
Location
JAUPFT010000008.1:48722447-48725202[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.7e-13 1.3e-10 43.1 0.0 1 40 15 53 15 57 0.94

Sequence Information

Coding Sequence
ATGCCAAAGTCTGCAAAAGGagaagtatatataaaaaaatatactgagGAAGATTTAGAAGCGGCACTCCAAGCAATTCAAAATGGTATGTCTAAAAGAGCAGCTGCCAAAGTATTTGGGATACCTCGAGGAACTTTGCAGTTTCGATTACAAGGGAATTTTTTAAAAACGAGACCGGGTCCGCCTACAATCCTTACAAATGACGAGGAAAACACTTTGGTTGAGTGGATAATACAAAGCAGTAGAAAAGGTTTTCCACGGCGTAAAGAAGATCTATTACAAAGTGTTACTGAATTTCTAAAGAAATCACCTAGGCCAaataattttatagataataagccaGGAGAGGGGTGGTACAAGTTGTTTCTTAAACGTCACCCCGAAATAGTACAAAGAACGGCTGAAGCTGTTACTTCGGCAAGTGCCAATGTATCAGAAGAGAACATCAAAAAATGGTTTCAGCAAATTGAAACTTGGTTAGATGAAGAAGAATTCCTGCATATTCTACGAGATCCTAAACGTATTTTTAACGGCGATGAAACAAATTTCTTGTTATATCCAAAAACCTCCAAAGTCTTAGCCCTAAAAGGTACTCGCGACGTGTATGAGGTGGATAACGCGCCTGCGAAATGTAGACTGACGGTGATGTTCACATTTTCGGCTACCGGAGTTATTACTCCACCGATGATTATCTACCCACTCAAACGTAACAGAGCAGATATTACTGCGTCTGTACCACCAGAATGGGGTTTAGGTCTGTCATCAAATGGATGGATGAACAAAGATCTATTTTTACAATACATTACTAATGTTTTACATCCATATcttgtaaaagaaaatacaaaattcCCCATTCTTCTGTTTGTTGATGGACACAAAAGTCATATCAATTTTGAACTTAGCAAAGCATGCAAAGAAAGAGGTATAATACTTATAGCATTATACCCAAACGCGACTCGCATCTTACAACCCGCAGATGTAGCTGCCTTTAAGCCGATAAAAAGTGCATGGAAAAAGGGAGTTTTAGAATGGAGAAGGGAAAATGCGACAAAAAATTTGACAAAAATTGATTTTGGACCAATACTAAGCATAGtattaaagaaatatatagacaaacaaattattataaacgGATTTCGAGCTTGTGGATTGTATCCTTGGAATCCAAATGCAATTAACTACCGAAAATGCCTTGGCAAAAATGTGACCCAATTGACCAGAATTCAAGAAAACAGACCACAAAGGGCAATAACATTCACAGAATTTGAAAAAATCGTGGGACAAAACATCGTATCCCGTCTTACTTCTGAGACACCCGATAAATCAAATTGTTTTTACAAAGCATTAAAAGACATATACGACCATTTGAAAGGCAAAAATATAGAACAGGAAGACAGTACTATTTCAAGCGATTATttagtaattgaaaataaattgatGGCAATAAATGACATACCGATCGTAATTTCAAACTCCAACAATATTGAAGAATCTCATACAGACACTATTGAAACTGAAACTACAGAGAATACTGAATTACCTACAACAGACTTATTTGACGATTTGAAGACCCTAAACCTAACAGAGTCCTACAATTTGTCAGCAGATATTCGGAATAGTATTGAAATGAATAATAATTACAATCAGAGCCAACTTATAGCGAATTCAGATTCAGACactcaaaattacttaaaaaatgaTCTGGAACCTACCAGTGACAACGTCGTTAAAGGCCCTTATCAATTGATGTCACCTAAATTAACAGCTATTGCTGAAATGCATAATGTTGACAAACTGAACGAAAGTACAGCGACTGTTAATGTTCTAAACAAAGAATCAAATGAAATAACAAACCCAAATTTATTAGTAATAGATAACGTTACAGAGActattaataaatcaaatattaataacCAAAACCAAATAGAAGAgacagaaaataacaaaaaatatgattttaattttGGCAATGCTAAATGCGATAGCGAAATGACACCtccgaaattaaaagaaattctcAATTGGCCCCAGACACCACAACGTAAAGGGAAAATTATGACCCACAATCCCATTTATGTCTTAACTAGTCGCAAATGGCTTGAAATcgaggaaaagaaaaaaaatgagaagaaaacaaaagaaaaagagaaagaagAACAAAACATTGAAATATTAAGACAAAAAGAAAAAGTTCCTAGGcatctattaaataaaaactcaaaaattgaagaaaataacagaaaaaataaaGAGGAAACAAAAACCGAAATAAAAGAACGAAAAAGAAAATATGATAAATCAATAACCACtgcatacaataaaaaaattaaaatagatgtaTGTGATAAAGAGACtgagaacaatatttttaagtgtGATGATACCAAGACTGAGTTATTAGATATAGACCAGATTAAAAAAACTACTCCAAAGCCTAATAAAGAAAGTAACATTAAAATTTTGTCTGTTGTGAAGGCGCCAGTTATGCATAAtccaagaaatatttttaatgaaaacagtTGCGTTGATACAAAGGTACCATTCGTTTTATCCAAACCCAAATCTATACTAAACAGAAGAGAGACATTCCGTAATGAAGAAGAACTGAGTAATTTTCTTAATGATGAATACCTAAATATGGATGAAAGCTCGATGTAA
Protein Sequence
MPKSAKGEVYIKKYTEEDLEAALQAIQNGMSKRAAAKVFGIPRGTLQFRLQGNFLKTRPGPPTILTNDEENTLVEWIIQSSRKGFPRRKEDLLQSVTEFLKKSPRPNNFIDNKPGEGWYKLFLKRHPEIVQRTAEAVTSASANVSEENIKKWFQQIETWLDEEEFLHILRDPKRIFNGDETNFLLYPKTSKVLALKGTRDVYEVDNAPAKCRLTVMFTFSATGVITPPMIIYPLKRNRADITASVPPEWGLGLSSNGWMNKDLFLQYITNVLHPYLVKENTKFPILLFVDGHKSHINFELSKACKERGIILIALYPNATRILQPADVAAFKPIKSAWKKGVLEWRRENATKNLTKIDFGPILSIVLKKYIDKQIIINGFRACGLYPWNPNAINYRKCLGKNVTQLTRIQENRPQRAITFTEFEKIVGQNIVSRLTSETPDKSNCFYKALKDIYDHLKGKNIEQEDSTISSDYLVIENKLMAINDIPIVISNSNNIEESHTDTIETETTENTELPTTDLFDDLKTLNLTESYNLSADIRNSIEMNNNYNQSQLIANSDSDTQNYLKNDLEPTSDNVVKGPYQLMSPKLTAIAEMHNVDKLNESTATVNVLNKESNEITNPNLLVIDNVTETINKSNINNQNQIEETENNKKYDFNFGNAKCDSEMTPPKLKEILNWPQTPQRKGKIMTHNPIYVLTSRKWLEIEEKKKNEKKTKEKEKEEQNIEILRQKEKVPRHLLNKNSKIEENNRKNKEETKTEIKERKRKYDKSITTAYNKKIKIDVCDKETENNIFKCDDTKTELLDIDQIKKTTPKPNKESNIKILSVVKAPVMHNPRNIFNENSCVDTKVPFVLSKPKSILNRRETFRNEEELSNFLNDEYLNMDESSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01158626; iTF_01158629;
90% Identity
iTF_01158626;
80% Identity
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