Porl013608.2
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- egg
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000036.1:1764384-1774280[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.8 6.7e+03 -1.2 0.0 29 38 68 77 32 79 0.71 2 7 3.6e-14 3e-10 41.6 0.0 4 75 109 173 106 175 0.89 3 7 0.083 6.9e+02 1.9 0.0 40 74 185 217 184 220 0.88 4 7 2.6 2.1e+04 -2.8 0.0 51 74 359 380 358 382 0.79 5 7 1 8.5e+03 -1.5 0.0 50 74 462 484 461 486 0.82 6 7 0.083 6.9e+02 1.9 0.0 40 74 497 529 496 532 0.88 7 7 0.27 2.2e+03 0.3 0.0 43 74 540 569 538 572 0.81
Sequence Information
- Coding Sequence
- ATGCCATACGTGGAATACACCCGCTACGACGAGCAACAATCTTCCAAAACACCTGCACCACAAACGCCGCAACAAAATGAAGTAAGAAATGCGTCGTCAGCGCGCCGTGGCCAAAGTCGACGACAACGAGCCAGCCGCCGACGCCCACGCCCGCCCGTGCCCGTGCCCGCGCCGCCCATCAACGCCGCCAACTTGGACAACGTCACCAGCCGAGTTGTGTATTACACGCCCAAGAATGCAGTACGCCCGTACAAGATGGTGCCGCATACCTGCGGACCGAAATGCAGACGCACAGACGTGTTGGCGCTCAAAGACCTACGCACGTACAACCCCTTGGCTAAGCCACTACTCAGTGGCTGGGAGAGGCAAATCGTGCGCTTCAAGGGGCACAAGGAGGTGATGTACCGCGCACCGTGCGGGCGGCGGCTGCGCTGCATGGCCGAGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGGTGAGCGGTGAGCGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGGTGAGCGGTGAGCGCTGGCTGCCGCTACCTGCGCGCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAGAAGGTGAGCGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGCTGGCTGCACCGCTACCTGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGCTGGCTGCACCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGGTGAGCGGTGAGCGCCGCACTCACGTCGTGACGTCACCGCATCACGACGTCACAACATCACAGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGGTGAGCGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAAGAAGGTGAGCGGTGAGCGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACGCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAGAAGCTGGCTGCACCGCTACCTGCGCGCCGTGCGCTCCGACATGTCCGTCGACCTGTTCGACTTCGCGCCCGCCACTGCCTCGCCGAGTTCGTGCTCAACAAGTGCCTCGTCGGCAGAAGGTGAGCGGTGA
- Protein Sequence
- MPYVEYTRYDEQQSSKTPAPQTPQQNEVRNASSARRGQSRRQRASRRRPRPPVPVPAPPINAANLDNVTSRVVYYTPKNAVRPYKMVPHTCGPKCRRTDVLALKDLRTYNPLAKPLLSGWERQIVRFKGHKEVMYRAPCGRRLRCMAELHRYLRAVRSDMSVDLFDFAPATHCLAEFVLNKCLVGKKVSGERWLHRYLRAVRSDMSVDLFDFAPATHCLAEFVLNKCLVGKKVSGERWLPLPARVRSDMSVDLFDFAPALPRRVRAQQVPRRQKVSAGCTATCAPCARHVRRPVRLRARTHCLAEFVLNKCLVGKKLAAPLPAPCAPTCPSTCSTSRRHALPRRVRAQQVPRRQEAGCTYLRAVRSDMSVDLFDFAPATHCLAEFVLNKCLVGKKVSGERRTHVVTSPHHDVTTSQLAAPLPARRALRHVRRPVRLRARHALPRRVRAQQVPRRQEGERWLHRYLRAVRSDMSVDLFDFAPATHCLAEFVLNKCLVGKKVSGERWLHRYLRAVRSDMSVDLFDFAPATHCLAEFVLNKCLVGRSWLHRYLRAVRSDMSVDLFDFAPATASPSSCSTSASSAEGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -