Porl018740.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000055.1:4607751-4618058[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-07 0.00025 22.7 0.0 1 36 193 228 193 234 0.90 2 2 2e-07 0.00011 23.8 0.1 2 40 269 307 268 312 0.86
Sequence Information
- Coding Sequence
- ATGGATTCGTTAGACGGTGATGGTGAAACGGTGATCTTCATAGGAAGATGTAAATGTTGCCTTAATGAaggagatttaaaaaatatgtggaCGCCGTATACATATGAAGGAGAAACCGAAATTTATGGATTGATGTTGACAGAATGTTTTGCTCTATCATGGCAGCAACCAGAGGATAACATGGGATATATGGATATGATATGCACCTCTTGCATCTCTCGGTTACGTGATGCACTTGCCTTCAAAAGAGAAGTTTTAGTGAGTGAAGAGGTGCTGCGTGAAAATCAATATGAAATATTTCTTCATACTACAGTGAAAGTAGAGAAAAATTTagaagaggaagaagaaaaaacCGAGTTTAGTGAAGTGGAATACTTAGAGATCCCAGACAGTTTAAACAAAGATGAATTACGTGAAGAATATTTATCAGATGATGCAGATGAATCTCTCGGGATGTCTATACAGCATTGGAACTACAATAACGGGCTCAGTGATGATGATAACATTGTTAACGTACAAGAAAAAGGTCAAAAAAGCTCACAAAGGAAGAAGGCTACAAAACGTACAAGACAGTATACTGACGAGGAACTGCAAATGGCCAATGATGCAGTCCAGAACAATGAAATGTCACATACAGAAGCGGCAGAGTTGTTTAATGTGCCCAGGCAAACTATCTCCGCTAAGATCCGCAATATTATAGATGAAGAAGAggAACAATCGCAGAGTCCAGAAGAAAATCGGAAAAGAAAATGGCCGAAGAAACTACCAAAGCAAGACCGAAACAAAACATACAAGCAGTATACTGAAAAGGCATTGAGAATGGCCATTGATGCTGTCCAGAATGAAGGCATATCACGTAGTGAAGCGTCAGAGAAGTTTAAGGTGCCCAGGGAAACTCTTGCATTAAGACTTCAGAATGCTATTGCCAAAAAAGAGGaactggatgatgatgatgcatcAAAAATAATAGACCAAGAAAAACACTACAAACTCGTAGAGGAAATTAAATCTATACTCACTTACACAAACGCAATACCATACAAATCAAGAATGTCAAGGTACTACTGTGCATACTGCTCTACAGATGGACCAGCTTTTGATGACGCCCATGATTTGAGGATTCACACTAAAACAAAGCATGTGGATGATCGGATCAAAGGCGTAGATCAGATAATGAGACCACACTGGCTAAATGAGGTGTTAAAGATTGATATACATAGTCTCCATTGTACAGTTTGCTGTACAATCCTGCCCACTTGGAATGACATGCTCCAACATCTTAAAGACGTGCACGAGGTTGCACTAGATGAGGCCTACAACAGAGTTATACCTTATATCCTCGCAAGGGAGCTGAAATGCGCTTTATGTGGTGAAGCCTTTCCTAGTTACCATATGGTGGACGGACATATGAACGCCCATTACAGCAGTTACATTTGCTACGAATGCGGTGATACTTTCTTATCAGCGAGCCGACTTAAAAAACATGTGTTAGTGCACAATACTGGGAGGTTCCCTTGCGAGGTTTGCGGTAAAGTGTACAATTTGAAGAAGTACATGAAGAAGCATTTTGACATCGTACATGGACAGAAAGGCCAATACAAATGCTCGTACTGTCCGGAAAGATTCTCCAGACCATTCCAAAGACATCAGCATGTACTCGAAAAGCACAAAGAGATGGTCAAGATTAAGACTTGCGAGATCTGCGGAAAGACTTTCGACTTTATGCCCTACTTCTCGGCTCACATGAGACGAAAGCATGGAAACGAGAAGAATTACAAATGCAAACAGTGCGACAAAAGATTCCTTATGAAGTATCAGTTGAGGGACCATCAAGAAAAGCATTTGGAGGAGAGGAACTTTGTTTGTGACGTGTGCAGTGAGAGATTTAAAACTAAATCCGGTTTAGTGCGACACTGTCAGCTGCATCATAACTTTCCAAGGGCAAAAAGTCAGACAGTTAAATAA
- Protein Sequence
- MDSLDGDGETVIFIGRCKCCLNEGDLKNMWTPYTYEGETEIYGLMLTECFALSWQQPEDNMGYMDMICTSCISRLRDALAFKREVLVSEEVLRENQYEIFLHTTVKVEKNLEEEEEKTEFSEVEYLEIPDSLNKDELREEYLSDDADESLGMSIQHWNYNNGLSDDDNIVNVQEKGQKSSQRKKATKRTRQYTDEELQMANDAVQNNEMSHTEAAELFNVPRQTISAKIRNIIDEEEEQSQSPEENRKRKWPKKLPKQDRNKTYKQYTEKALRMAIDAVQNEGISRSEASEKFKVPRETLALRLQNAIAKKEELDDDDASKIIDQEKHYKLVEEIKSILTYTNAIPYKSRMSRYYCAYCSTDGPAFDDAHDLRIHTKTKHVDDRIKGVDQIMRPHWLNEVLKIDIHSLHCTVCCTILPTWNDMLQHLKDVHEVALDEAYNRVIPYILARELKCALCGEAFPSYHMVDGHMNAHYSSYICYECGDTFLSASRLKKHVLVHNTGRFPCEVCGKVYNLKKYMKKHFDIVHGQKGQYKCSYCPERFSRPFQRHQHVLEKHKEMVKIKTCEICGKTFDFMPYFSAHMRRKHGNEKNYKCKQCDKRFLMKYQLRDHQEKHLEERNFVCDVCSERFKTKSGLVRHCQLHHNFPRAKSQTVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158611;
- 90% Identity
- iTF_01158289;
- 80% Identity
- iTF_01158289;