Pmne047612.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000094.1:7788573-7791322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00039 0.081 15.3 3.4 1 23 4 27 4 27 0.94 2 17 0.38 79 5.9 0.8 2 23 55 77 54 77 0.95 3 17 0.092 19 7.9 0.0 4 23 102 122 102 122 0.94 4 17 0.00053 0.11 14.9 2.7 3 23 172 192 170 192 0.96 5 17 0.4 85 5.8 0.0 2 14 217 229 216 232 0.87 6 17 0.47 1e+02 5.6 0.5 1 23 259 282 259 282 0.95 7 17 5.7e-05 0.012 17.9 1.0 2 23 287 309 287 309 0.96 8 17 1.1e-05 0.0024 20.2 0.6 1 23 314 337 314 337 0.95 9 17 0.0037 0.77 12.3 2.2 2 21 340 359 340 362 0.95 10 17 0.15 31 7.2 4.1 2 21 369 388 369 389 0.95 11 17 0.42 89 5.8 0.0 2 23 503 526 502 526 0.94 12 17 1.9 4e+02 3.7 0.1 9 23 530 545 528 545 0.90 13 17 0.021 4.4 9.9 4.9 2 23 550 572 549 572 0.93 14 17 0.0013 0.28 13.6 2.8 1 23 577 600 577 600 0.97 15 17 3.5e-06 0.00073 21.8 5.2 1 23 604 627 604 627 0.98 16 17 0.0031 0.64 12.5 0.5 3 23 635 655 633 655 0.95 17 17 5.3e-05 0.011 18.0 0.7 1 23 661 683 661 683 0.96
Sequence Information
- Coding Sequence
- ATGAGTAGATTTAGATGTTTCTATTGTTCCAAAGATTTCACGGATTGCGATGATCTAAAGCAACACACTGTTATGGAACATCCTCTCTGTGATATCGAATTAAAGGCTATGAAACTGCGAAATAGGGAAGAGGGTCGTATTAAAATTGATACGTGCAAACTGTCCTGTAAAGTCTGCTATAAATCTTTGCTCGATTTAAATCATTTAATAGACCATCTAACAACAGAACACAAATCTAATATAGATAAAACTGTTGATAACCAATTGCAGCCGTACGAACTTACGAAGGATAACTTTGCTAGTCCTATTTGCGGGGAGGTCTATAGATATTTTGCGATGCTATTGAAACATGTTAGTGTTACGCATACGGACAACAAAAATGTCTGCTCTTATTGCGATGAAATTCCGCAAGGGCCGTACGAGAACTGTACCTCTGAGAGAAGGAGGAAAAACTTGCAAATTCTTTTCAACAATACAATTATTTTGCCGTTCAAGTGGCGAGGAAGGTGCCTCTGTTTTTATTGCGGAAAGAGTTACACGGAGTATACGGATTTGCGGAAACACGCTCAATCACACGGCCCTTGCACCACGAAAGACTATTCATTGAAACTAATAAAAGGAAATCACATTGAAATTAAAAGCGATATCACGTGTGAAATTTGCAATGAACCTTTCACTACATTCGACGAAATAATTGATAATTTAATTGGAAAACACAACATGGACTACGATAAAAGTATAGACACGCCTCTTCAAGAATACAGACTTGCGGATTTCCGTTGTCTATTTTGCGACCAACAGATTACTTACTTCGGATATTTGGTGAATCATGTCAACAACGTTCATCCGCAAAATAATGTTTGTAATGATTGCGGTGTGAGTTTCAATAAGAAAAGAGATTTGGCGTTGCATATAAGACATAACCATCGCCAAGGAGGATACTCTTGTCCAGAATGCCCACAGAGTTTCGAATCTCATGGCCTTCTTCGTAAACATCAAATGGATTTGCATTTCAGGAAATGTAAACGTTGCGGGATGAACTTTGCTTCCTATAGTCTGCTATTAAAACATATACAATGTGATCATCCAGATGATGGTAGCCCCAAATGTTCGCATTGTTCCAAACAATGCAACGCGTCTCAAGATTTAAAACAACACATAAACAAGTGTAAAGTTAATATGCTTGTACAAATAGATCAACCTGTAGATAACAACCGTTCCTTCGACAATGTGTTGCAACTGAAAAAGAAACAAAACATCCTACAAGTACGACAGAATATTCAAACACATACTGTATGCTATTTAAAGTCAAAGGGCATGAAAAATTGTAAAGTAGACAGAATAACCGTAAAAGTAGATATAACAGAACTGAGCTGTAAAATTTGCGGCCAGCTTATGGATAATTTACACATTCTAATAGATCACTTAGTCTCACAACATGACGCCAACTACGACAAATCTGTAACGGGTTGTCTAGAGCCGTACAGGGTGATAAAAGACAACATGCCGTGCCCGATCTGTCCAAATCGCGTGTTTAGTTATTTTGGTATCCTACTTAGACATATAAACTCGGTGCATAGTAACAACAGTTTTAAGGACATAACAAATCTAAAGGTGCATATTACTAACGCACATACCGGTGCCTGCGAGTGTGATATTTGCGGCACGAAGTACAAGAATCAGTTGTGTTTGAGCCGGCACAAAGCGAAAAGCCACAACGCGAAAGATTACAAATGCCCGAAATGCCCAGAGTTTTTCCAGTCAGAGTACCATAAGCAAAAACATCTGATCAAAGTCCACGACATCGGTCACAAGTGTACGTACTGCGGGAAAATGTTCACTAGAAACTCGTTCATGAAGGACCATATACGTAGGACTCATCTGAAGGAGAAAAATGTGATCTGTTCGGTCTGTAACGAAAGATTCTTCGACAACTACCTCCTAAGAATGCATAAGGTGAAGCACGAGGGCGAGCGGAAGTTTAGCTGTGAAGTTTGCGGCAAAGCGTTTCTTAGGAGGAGCAATCTCAGTAAGCATAAGGAACTGCATCAGAAGTAA
- Protein Sequence
- MSRFRCFYCSKDFTDCDDLKQHTVMEHPLCDIELKAMKLRNREEGRIKIDTCKLSCKVCYKSLLDLNHLIDHLTTEHKSNIDKTVDNQLQPYELTKDNFASPICGEVYRYFAMLLKHVSVTHTDNKNVCSYCDEIPQGPYENCTSERRRKNLQILFNNTIILPFKWRGRCLCFYCGKSYTEYTDLRKHAQSHGPCTTKDYSLKLIKGNHIEIKSDITCEICNEPFTTFDEIIDNLIGKHNMDYDKSIDTPLQEYRLADFRCLFCDQQITYFGYLVNHVNNVHPQNNVCNDCGVSFNKKRDLALHIRHNHRQGGYSCPECPQSFESHGLLRKHQMDLHFRKCKRCGMNFASYSLLLKHIQCDHPDDGSPKCSHCSKQCNASQDLKQHINKCKVNMLVQIDQPVDNNRSFDNVLQLKKKQNILQVRQNIQTHTVCYLKSKGMKNCKVDRITVKVDITELSCKICGQLMDNLHILIDHLVSQHDANYDKSVTGCLEPYRVIKDNMPCPICPNRVFSYFGILLRHINSVHSNNSFKDITNLKVHITNAHTGACECDICGTKYKNQLCLSRHKAKSHNAKDYKCPKCPEFFQSEYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHKVKHEGERKFSCEVCGKAFLRRSNLSKHKELHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157031;
- 90% Identity
- -
- 80% Identity
- -