Pmne024055.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:6352493-6354596[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0052 1.1 11.8 1.1 1 23 12 34 12 34 0.97 2 18 0.75 1.6e+02 5.0 1.1 1 10 40 49 40 53 0.95 3 18 0.00032 0.067 15.6 3.0 3 23 96 116 94 116 0.96 4 18 0.0098 2.1 10.9 0.0 2 23 144 166 143 166 0.91 5 18 0.0073 1.5 11.3 1.0 1 23 186 209 186 209 0.96 6 18 1.5e-06 0.00032 22.9 0.8 1 23 214 237 214 237 0.97 7 18 3.8e-05 0.0079 18.5 1.2 1 23 242 265 242 265 0.93 8 18 0.0065 1.4 11.5 2.5 2 21 268 287 268 290 0.94 9 18 0.0036 0.76 12.3 4.1 2 21 297 316 297 317 0.95 10 18 0.0023 0.48 12.9 1.3 1 23 373 396 373 396 0.94 11 18 5.8 1.2e+03 2.2 0.0 2 20 424 442 423 446 0.69 12 18 0.46 97 5.7 0.1 2 23 469 492 468 492 0.94 13 18 4.8e-05 0.01 18.2 0.3 3 23 498 519 497 519 0.94 14 18 0.02 4.2 10.0 4.9 2 23 524 546 523 546 0.93 15 18 0.00019 0.041 16.3 3.0 1 23 551 574 551 574 0.97 16 18 3.3e-06 0.00069 21.8 5.2 1 23 578 601 578 601 0.98 17 18 0.00028 0.058 15.8 0.3 3 23 609 629 607 629 0.96 18 18 5.1e-05 0.011 18.1 0.7 1 23 635 657 635 657 0.96
Sequence Information
- Coding Sequence
- ATGGTCTTACTGCGCCAAATCAATAAGAAGAGTTTCGAATGTTCCTTGTGTCGCGAAAGGTTTTTTGATGCGCAACGCCTGAAAATGCATATGGTGAAACATTATGGGGAACGAAATTTTCATTGCGATGTTTGTGGAAAGAAATTTCTTTGGAAGAAAAACCTGAGAGATGAAATTCCGCAAGGGCCGTACGAGAACTGTACCTCCGAGAGGAGGAGGAAAAATTTGCAAATTCTATTCAACAACACAACTATTTTGCCGTTCAAGTGGCGAGGAAGGTGCCTCTGTTTCTATTGTGGAAAGAGTTACACGGAGTATACGGATTTAAGGAAACACACCCAAATACACGGCCCTTACACCACAAAAGACTATTCGTTGAGACTGATAAAAAGAAATCACATTGAAATTAAAATCGATGTAGCGGATATCACGTGTGAAATTTGCAATGAACCTTTCACTACATTCGACGAAATAATCGATCATTTAATTGGAAAACACAACATGGACTACGATAAGAGTATAGACACGCCTCTTCAAGAATACAGACTTGCGGATTTCCGTTGTCTATTTTGCGACCAACAGTTTACTTACTTCGGATATTTGGTGAATCACGTCAACAACGTTCATCCGCAAAATAATTATGTTTGTAATGATTGCGGTGTGAGTTTCAATAAGAAAAGCGATTTGGCGTTGCATATACGACATAACCATCGCCAAGTAGGATACTCCTGTCCAGAATGTCCACAGAGCTTCGAATCTCATGGTCTTCTTCGTAAACATCAAACCGATTTCCATTTCAGGAAATGTAAACGTTGCGGGATGAACTTTGCTTCCTATAGTCTGCTATTAAAACATTTACAATGTGATCATCCAGATGACGCCAGCGCCAAATGTCCGCATTGTTCCAAACAATGCAACTCGTCTCAAGATTTAAAACAACACATAAATAAGTGTAAAGTTAATATGCTTGTACAAATAGATCAACCTGTAGATAACAACCGTTTCTTCGACAATATGTTGCAACTGAAAAAGAAACAAAACATCCTACAAATACGACAGAATATTCAGTGCGTTCTGAACATGTCTACAGCGTTACCGTTTAAGTTTTTCGCGAAATATTACTGTTTTTATTGCTCGAAGAAATTCGTTGAATTTGACGAACTAAGGGAACACACTTTACTAGAACATACTGTATGCGATTTAAAGTCAAAGGGCATGAAAAATTGTAAAGGAGACAGAATAGCCGTAAAAGTAGATATAACAGAACTGAGCTGTAAAATTTGCGGCCAGCCTATGGACAATTTAGACATTCTAATAGATCACTTAGTCTCACAACATGACGCCAACTACGACAAATCCGTAACAGGCTGTCTAGAGCCTTACAGGGTGATAAAAGACAACATGCCGTGCCCGATCTGTCCAAATCGCGTGTTTAGATATTTTGGTATCCTACTTAGGCATATAAACTCGGAGCATAGTAACAACAGGATCTGCGATTTTTGTGGCCGCAGTTTTAAGGACATAACAAATCTAAAAGTGCATATTACTAACGCACATACCGGCGCCTGCGAGTGTGATATTTGCGGCACGAAGTACAAGAATCAGTTGTGTTTGAGCCGGCACAAAGCGAAAAGCCACAACGCGAAAGATTACAAATGCCCGAAATGCCCAGAGTTTTTCCGGTCAGAGTACCACAAGCAAAAACATTTGATCAAAGTCCACGACATCGGTCACAAGTGTACGTACTGCGGGAAAATGTTCACTAGAAACTCGTTCATGAAGGACCATATACGTAGGACTCATCTGAAGGAGAAGAATGTGATCTGTTCGGTCTGTAACGAGAGATTCTTCGACAACTACCTGCTGAGAATGCATATGGTGAAGCACGAGGGCGAGCGGAAGTTCAGCTGTGAAGTTTGCGGCAAAGCGTTTCTTAGGAGGAGCAATCTCAGTAAGCATAAGGAACTGCATCAGAAGTAA
- Protein Sequence
- MVLLRQINKKSFECSLCRERFFDAQRLKMHMVKHYGERNFHCDVCGKKFLWKKNLRDEIPQGPYENCTSERRRKNLQILFNNTTILPFKWRGRCLCFYCGKSYTEYTDLRKHTQIHGPYTTKDYSLRLIKRNHIEIKIDVADITCEICNEPFTTFDEIIDHLIGKHNMDYDKSIDTPLQEYRLADFRCLFCDQQFTYFGYLVNHVNNVHPQNNYVCNDCGVSFNKKSDLALHIRHNHRQVGYSCPECPQSFESHGLLRKHQTDFHFRKCKRCGMNFASYSLLLKHLQCDHPDDASAKCPHCSKQCNSSQDLKQHINKCKVNMLVQIDQPVDNNRFFDNMLQLKKKQNILQIRQNIQCVLNMSTALPFKFFAKYYCFYCSKKFVEFDELREHTLLEHTVCDLKSKGMKNCKGDRIAVKVDITELSCKICGQPMDNLDILIDHLVSQHDANYDKSVTGCLEPYRVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNRICDFCGRSFKDITNLKVHITNAHTGACECDICGTKYKNQLCLSRHKAKSHNAKDYKCPKCPEFFRSEYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSKHKELHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157044;
- 90% Identity
- -
- 80% Identity
- -