Pmne050606.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000104.1:8019981-8020961[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-07 0.00016 23.2 0.1 11 39 3 31 1 37 0.81 2 2 3.7 1.3e+03 1.2 0.0 28 44 224 241 223 242 0.88
Sequence Information
- Coding Sequence
- ATGGCTGCTGTTGAAGTAGGGCTGATGTCGCAACGTGCGGCGTCTGCGCGGTATTCTATTCCCAGAAGAACTTTGGTAAACCACCTGAAATCTGGAAAAGTCGAAAAACAAATAGGACGTCGTACAGTTTTAACACCAGAGCAAGAAAATGATTTGGCGTCGAGAATCAAAAGGCTTGCTTCCATAGGATTCCCTTTAACGCCAAATGTCATTCGTCGTCAAGCTTATGTGTTTTGTGAACAACACAAAATTCCTAATAATTTTAATCCGACAGCAAGGCGAGCGGGTAAAGActggttaaaattatttttaaaaagacatcCCGATATATCAAAGCGCAAGGTTCAAATCTTAAACCCAGGAAGGGCACAGAAGCTGAACAAGCATATTGTCATGCAGCATTTTGCTGAATATAAGAAAATATACGAAGCGCTAGAgatcgggcaacatccgcaacgCTTATACAACATGGATGAAAAAGGCTGCCGTCTCAACATTCACAACCAGCCAGTGGTATTGGCACAGAAAGGTGCTAAAAGAGTGCAAATGGTTGCACCAGAGCACGCAGAGAATGTCACCGTGGCTGTGTGTGTAAATGCATTAGGTAGTCCAATTCCCCCAATGATACTATTCAAGGGGAAAAGGTTAAAGCCGGAATTTAATGATAATTTGCCTGCAGGATCACTCGTGAAAATGGCAAAGAAAGGCAGCATGACTTCATCACTGTTTATAGATTTCATACATCACTTGGCAAAATATAAAGCGGCCGGCAGGTGTCTTCTAGTTTTTGATGGCGCTTCATGTCATTTAGATTATAATATTGTTGATGCAGCAGAGCAACACGATATTATATTGTACTGCTTGCCATCAAATACTACGCATGAGCTCCAGCCTCTAGATAAAAGCGTAAACAAATCATTTGAACACCACTGGGATGAAGAAGCCTTACTTTATTTATACCAAAAGCCAGGGAAAAACTAA
- Protein Sequence
- MAAVEVGLMSQRAASARYSIPRRTLVNHLKSGKVEKQIGRRTVLTPEQENDLASRIKRLASIGFPLTPNVIRRQAYVFCEQHKIPNNFNPTARRAGKDWLKLFLKRHPDISKRKVQILNPGRAQKLNKHIVMQHFAEYKKIYEALEIGQHPQRLYNMDEKGCRLNIHNQPVVLAQKGAKRVQMVAPEHAENVTVAVCVNALGSPIPPMILFKGKRLKPEFNDNLPAGSLVKMAKKGSMTSSLFIDFIHHLAKYKAAGRCLLVFDGASCHLDYNIVDAAEQHDIILYCLPSNTTHELQPLDKSVNKSFEHHWDEEALLYLYQKPGKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406650;
- 90% Identity
- iTF_01154961;
- 80% Identity
- -